Gene : Eucgr.D02030 E. grandis v2.0
Defline:  (1 of 1) PTHR10683:SF10 - TRANSALDOLASE-LIKE PROTEIN Genomic Order:  1675
Name:  ? Eucgr.D02030 Secondary Identifier:  ? PAC:32051321
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis NONOXIPENT-PWY Eucalyptus grandis pathologic  
Egrandis PENTOSE-P-PWY Eucalyptus grandis pathologic  
Egrandis PWY-5723 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D02030 0.5kb upstream 0.5kb upstream 7873 true Chr04: 33945539-33953411 Eucalyptus grandis
Eucgr.D02030 0.5kb upstream 0.5kb upstream 500 false Chr04: 33952912-33953411 Eucalyptus grandis
Eucgr.D02030 0.5kb downstream 0.5kb downstream 7873 true Chr04: 33945039-33952911 Eucalyptus grandis
Eucgr.D02030 0.5kb downstream 0.5kb downstream 500 false Chr04: 33945039-33945538 Eucalyptus grandis
Eucgr.D02030 1.0kb upstream 1.0kb upstream 8373 true Chr04: 33945539-33953911 Eucalyptus grandis
Eucgr.D02030 1.0kb upstream 1.0kb upstream 1000 false Chr04: 33952912-33953911 Eucalyptus grandis
Eucgr.D02030 1.0kb downstream 1.0kb downstream 8373 true Chr04: 33944539-33952911 Eucalyptus grandis
Eucgr.D02030 1.0kb downstream 1.0kb downstream 1000 false Chr04: 33944539-33945538 Eucalyptus grandis
Eucgr.D02030 2.0kb upstream 2.0kb upstream 9373 true Chr04: 33945539-33954911 Eucalyptus grandis
Eucgr.D02030 2.0kb upstream 2.0kb upstream 2000 false Chr04: 33952912-33954911 Eucalyptus grandis
Eucgr.D02030 2.0kb downstream 2.0kb downstream 9373 true Chr04: 33943539-33952911 Eucalyptus grandis
Eucgr.D02030 2.0kb downstream 2.0kb downstream 2000 false Chr04: 33943539-33945538 Eucalyptus grandis
Eucgr.D02030 5.0kb upstream 5.0kb upstream 12373 true Chr04: 33945539-33957911 Eucalyptus grandis
Eucgr.D02030 5.0kb upstream 5.0kb upstream 5000 false Chr04: 33952912-33957911 Eucalyptus grandis
Eucgr.D02030 5.0kb downstream 5.0kb downstream 12373 true Chr04: 33940539-33952911 Eucalyptus grandis
Eucgr.D02030 5.0kb downstream 5.0kb downstream 5000 false Chr04: 33940539-33945538 Eucalyptus grandis
Eucgr.D02030 10.0kb upstream 10.0kb upstream 17373 true Chr04: 33945539-33962911 Eucalyptus grandis
Eucgr.D02030 10.0kb upstream 10.0kb upstream 10000 false Chr04: 33952912-33962911 Eucalyptus grandis
Eucgr.D02030 10.0kb downstream 10.0kb downstream 17373 true Chr04: 33935539-33952911 Eucalyptus grandis
Eucgr.D02030 10.0kb downstream 10.0kb downstream 10000 false Chr04: 33935539-33945538 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124061321 5270 Rosid View MSA
123737527 5271 Pentapetalae View MSA
122787081 5272 Eudicot View MSA
122043979 5273 Angiosperm View MSA
121346789 5274 Embryophyte View MSA
123424119 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.3595 0.0 52.0308    
cufflinks 28.9979 0.0 64.2233    
cufflinks 23.8632 0.0 53.1    
cufflinks 18.6356 0.0 41.7952   Low
cufflinks 28.6222 0.0 63.4279    
cufflinks 41.418 0.0 91.6056 High High

0 Strain