Gene : Eucgr.D02611 E. grandis v2.0
Defline:  (1 of 1) PTHR31499:SF5 - HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN Genomic Order:  2184
Name:  ? Eucgr.D02611 Secondary Identifier:  ? PAC:32050792
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D02611 0.5kb upstream 0.5kb upstream 4565 true Chr04: 40020902-40025466 Eucalyptus grandis
Eucgr.D02611 0.5kb upstream 0.5kb upstream 500 false Chr04: 40024967-40025466 Eucalyptus grandis
Eucgr.D02611 0.5kb downstream 0.5kb downstream 4565 true Chr04: 40020402-40024966 Eucalyptus grandis
Eucgr.D02611 0.5kb downstream 0.5kb downstream 500 false Chr04: 40020402-40020901 Eucalyptus grandis
Eucgr.D02611 1.0kb upstream 1.0kb upstream 5065 true Chr04: 40020902-40025966 Eucalyptus grandis
Eucgr.D02611 1.0kb upstream 1.0kb upstream 1000 false Chr04: 40024967-40025966 Eucalyptus grandis
Eucgr.D02611 1.0kb downstream 1.0kb downstream 5065 true Chr04: 40019902-40024966 Eucalyptus grandis
Eucgr.D02611 1.0kb downstream 1.0kb downstream 1000 false Chr04: 40019902-40020901 Eucalyptus grandis
Eucgr.D02611 2.0kb upstream 2.0kb upstream 6065 true Chr04: 40020902-40026966 Eucalyptus grandis
Eucgr.D02611 2.0kb upstream 2.0kb upstream 2000 false Chr04: 40024967-40026966 Eucalyptus grandis
Eucgr.D02611 2.0kb downstream 2.0kb downstream 6065 true Chr04: 40018902-40024966 Eucalyptus grandis
Eucgr.D02611 2.0kb downstream 2.0kb downstream 2000 false Chr04: 40018902-40020901 Eucalyptus grandis
Eucgr.D02611 5.0kb upstream 5.0kb upstream 9065 true Chr04: 40020902-40029966 Eucalyptus grandis
Eucgr.D02611 5.0kb upstream 5.0kb upstream 5000 false Chr04: 40024967-40029966 Eucalyptus grandis
Eucgr.D02611 5.0kb downstream 5.0kb downstream 9065 true Chr04: 40015902-40024966 Eucalyptus grandis
Eucgr.D02611 5.0kb downstream 5.0kb downstream 5000 false Chr04: 40015902-40020901 Eucalyptus grandis
Eucgr.D02611 10.0kb upstream 10.0kb upstream 14065 true Chr04: 40020902-40034966 Eucalyptus grandis
Eucgr.D02611 10.0kb upstream 10.0kb upstream 10000 false Chr04: 40024967-40034966 Eucalyptus grandis
Eucgr.D02611 10.0kb downstream 10.0kb downstream 14065 true Chr04: 40010902-40024966 Eucalyptus grandis
Eucgr.D02611 10.0kb downstream 10.0kb downstream 10000 false Chr04: 40010902-40020901 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124073439 5270 Rosid View MSA
123741048 5271 Pentapetalae View MSA
122787904 5272 Eudicot View MSA
122042666 5273 Angiosperm View MSA
123428935 5275 Viridiplantae View MSA
121349639 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.95846 0.0 5.21352   High
cufflinks 1.42926 0.0 3.93033    
cufflinks 1.53461 0.0 4.18661    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.40154 0.0 3.85099    

0 Strain