Gene : Eucgr.D02578 E. grandis v2.0
Defline:  (1 of 1) PTHR12121:SF42 - CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 4-RELATED Genomic Order:  2152
Name:  ? Eucgr.D02578 Secondary Identifier:  ? PAC:32051052
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D02578 0.5kb upstream 0.5kb upstream 6401 true Chr04: 39757004-39763404 Eucalyptus grandis
Eucgr.D02578 0.5kb upstream 0.5kb upstream 500 false Chr04: 39762905-39763404 Eucalyptus grandis
Eucgr.D02578 0.5kb downstream 0.5kb downstream 6401 true Chr04: 39756504-39762904 Eucalyptus grandis
Eucgr.D02578 0.5kb downstream 0.5kb downstream 500 false Chr04: 39756504-39757003 Eucalyptus grandis
Eucgr.D02578 1.0kb upstream 1.0kb upstream 6901 true Chr04: 39757004-39763904 Eucalyptus grandis
Eucgr.D02578 1.0kb upstream 1.0kb upstream 1000 false Chr04: 39762905-39763904 Eucalyptus grandis
Eucgr.D02578 1.0kb downstream 1.0kb downstream 6901 true Chr04: 39756004-39762904 Eucalyptus grandis
Eucgr.D02578 1.0kb downstream 1.0kb downstream 1000 false Chr04: 39756004-39757003 Eucalyptus grandis
Eucgr.D02578 2.0kb upstream 2.0kb upstream 7901 true Chr04: 39757004-39764904 Eucalyptus grandis
Eucgr.D02578 2.0kb upstream 2.0kb upstream 2000 false Chr04: 39762905-39764904 Eucalyptus grandis
Eucgr.D02578 2.0kb downstream 2.0kb downstream 7901 true Chr04: 39755004-39762904 Eucalyptus grandis
Eucgr.D02578 2.0kb downstream 2.0kb downstream 2000 false Chr04: 39755004-39757003 Eucalyptus grandis
Eucgr.D02578 5.0kb upstream 5.0kb upstream 10901 true Chr04: 39757004-39767904 Eucalyptus grandis
Eucgr.D02578 5.0kb upstream 5.0kb upstream 5000 false Chr04: 39762905-39767904 Eucalyptus grandis
Eucgr.D02578 5.0kb downstream 5.0kb downstream 10901 true Chr04: 39752004-39762904 Eucalyptus grandis
Eucgr.D02578 5.0kb downstream 5.0kb downstream 5000 false Chr04: 39752004-39757003 Eucalyptus grandis
Eucgr.D02578 10.0kb upstream 10.0kb upstream 15901 true Chr04: 39757004-39772904 Eucalyptus grandis
Eucgr.D02578 10.0kb upstream 10.0kb upstream 10000 false Chr04: 39762905-39772904 Eucalyptus grandis
Eucgr.D02578 10.0kb downstream 10.0kb downstream 15901 true Chr04: 39747004-39762904 Eucalyptus grandis
Eucgr.D02578 10.0kb downstream 10.0kb downstream 10000 false Chr04: 39747004-39757003 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124063704 5270 Rosid View MSA
123740747 5271 Pentapetalae View MSA
122787902 5272 Eudicot View MSA
122047277 5273 Angiosperm View MSA
121350616 5274 Embryophyte View MSA
123428031 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.78363 0.0 9.98691    
cufflinks 8.51365 0.0 21.3489   High
cufflinks 4.71142 0.0 14.4962    
cufflinks 3.48809 0.0 11.4947   Low
cufflinks 6.56088 0.0 18.5897    
cufflinks 6.18748 0.0 15.5203    

0 Strain