Gene : Eucgr.D02540 E. grandis v2.0
Defline:  (1 of 2) PTHR21433 - TRANSMEMBRANE PROTEIN INDUCED BY TUMOR NECROSIS FACTOR ALPHA Genomic Order:  2116
Name:  ? Eucgr.D02540 Secondary Identifier:  ? PAC:32052056
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D02540 0.5kb upstream 0.5kb upstream 8173 true Chr04: 39323254-39331426 Eucalyptus grandis
Eucgr.D02540 0.5kb upstream 0.5kb upstream 500 false Chr04: 39323254-39323753 Eucalyptus grandis
Eucgr.D02540 0.5kb downstream 0.5kb downstream 8173 true Chr04: 39323754-39331926 Eucalyptus grandis
Eucgr.D02540 0.5kb downstream 0.5kb downstream 500 false Chr04: 39331427-39331926 Eucalyptus grandis
Eucgr.D02540 1.0kb upstream 1.0kb upstream 8673 true Chr04: 39322754-39331426 Eucalyptus grandis
Eucgr.D02540 1.0kb upstream 1.0kb upstream 1000 false Chr04: 39322754-39323753 Eucalyptus grandis
Eucgr.D02540 1.0kb downstream 1.0kb downstream 8673 true Chr04: 39323754-39332426 Eucalyptus grandis
Eucgr.D02540 1.0kb downstream 1.0kb downstream 1000 false Chr04: 39331427-39332426 Eucalyptus grandis
Eucgr.D02540 2.0kb upstream 2.0kb upstream 9673 true Chr04: 39321754-39331426 Eucalyptus grandis
Eucgr.D02540 2.0kb upstream 2.0kb upstream 2000 false Chr04: 39321754-39323753 Eucalyptus grandis
Eucgr.D02540 2.0kb downstream 2.0kb downstream 9673 true Chr04: 39323754-39333426 Eucalyptus grandis
Eucgr.D02540 2.0kb downstream 2.0kb downstream 2000 false Chr04: 39331427-39333426 Eucalyptus grandis
Eucgr.D02540 5.0kb upstream 5.0kb upstream 12673 true Chr04: 39318754-39331426 Eucalyptus grandis
Eucgr.D02540 5.0kb upstream 5.0kb upstream 5000 false Chr04: 39318754-39323753 Eucalyptus grandis
Eucgr.D02540 5.0kb downstream 5.0kb downstream 12673 true Chr04: 39323754-39336426 Eucalyptus grandis
Eucgr.D02540 5.0kb downstream 5.0kb downstream 5000 false Chr04: 39331427-39336426 Eucalyptus grandis
Eucgr.D02540 10.0kb upstream 10.0kb upstream 17673 true Chr04: 39313754-39331426 Eucalyptus grandis
Eucgr.D02540 10.0kb upstream 10.0kb upstream 10000 false Chr04: 39313754-39323753 Eucalyptus grandis
Eucgr.D02540 10.0kb downstream 10.0kb downstream 17673 true Chr04: 39323754-39341426 Eucalyptus grandis
Eucgr.D02540 10.0kb downstream 10.0kb downstream 10000 false Chr04: 39331427-39341426 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124065114 5270 Rosid View MSA
123747288 5271 Pentapetalae View MSA
122787986 5272 Eudicot View MSA
122046309 5273 Angiosperm View MSA
121351059 5274 Embryophyte View MSA
123427435 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.1661 0.0 57.426    
cufflinks 74.3027 0.0 177.337 High High
cufflinks 20.6401 0.0 46.7273    
cufflinks 42.4471 0.0 96.9365 High  
cufflinks 27.7528 0.0 69.5972    
cufflinks 26.6996 0.0 60.3337    

0 Strain