Gene : Eucgr.D02457 E. grandis v2.0
Defline:  (1 of 53) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  2044
Name:  ? Eucgr.D02457 Secondary Identifier:  ? PAC:32051219
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D02457 0.5kb upstream 0.5kb upstream 1865 true Chr04: 38258986-38260850 Eucalyptus grandis
Eucgr.D02457 0.5kb upstream 0.5kb upstream 500 false Chr04: 38258986-38259485 Eucalyptus grandis
Eucgr.D02457 0.5kb downstream 0.5kb downstream 1865 true Chr04: 38259486-38261350 Eucalyptus grandis
Eucgr.D02457 0.5kb downstream 0.5kb downstream 500 false Chr04: 38260851-38261350 Eucalyptus grandis
Eucgr.D02457 1.0kb upstream 1.0kb upstream 2365 true Chr04: 38258486-38260850 Eucalyptus grandis
Eucgr.D02457 1.0kb upstream 1.0kb upstream 1000 false Chr04: 38258486-38259485 Eucalyptus grandis
Eucgr.D02457 1.0kb downstream 1.0kb downstream 2365 true Chr04: 38259486-38261850 Eucalyptus grandis
Eucgr.D02457 1.0kb downstream 1.0kb downstream 1000 false Chr04: 38260851-38261850 Eucalyptus grandis
Eucgr.D02457 2.0kb upstream 2.0kb upstream 3365 true Chr04: 38257486-38260850 Eucalyptus grandis
Eucgr.D02457 2.0kb upstream 2.0kb upstream 2000 false Chr04: 38257486-38259485 Eucalyptus grandis
Eucgr.D02457 2.0kb downstream 2.0kb downstream 3365 true Chr04: 38259486-38262850 Eucalyptus grandis
Eucgr.D02457 2.0kb downstream 2.0kb downstream 2000 false Chr04: 38260851-38262850 Eucalyptus grandis
Eucgr.D02457 5.0kb upstream 5.0kb upstream 6365 true Chr04: 38254486-38260850 Eucalyptus grandis
Eucgr.D02457 5.0kb upstream 5.0kb upstream 5000 false Chr04: 38254486-38259485 Eucalyptus grandis
Eucgr.D02457 5.0kb downstream 5.0kb downstream 6365 true Chr04: 38259486-38265850 Eucalyptus grandis
Eucgr.D02457 5.0kb downstream 5.0kb downstream 5000 false Chr04: 38260851-38265850 Eucalyptus grandis
Eucgr.D02457 10.0kb upstream 10.0kb upstream 11365 true Chr04: 38249486-38260850 Eucalyptus grandis
Eucgr.D02457 10.0kb upstream 10.0kb upstream 10000 false Chr04: 38249486-38259485 Eucalyptus grandis
Eucgr.D02457 10.0kb downstream 10.0kb downstream 11365 true Chr04: 38259486-38270850 Eucalyptus grandis
Eucgr.D02457 10.0kb downstream 10.0kb downstream 10000 false Chr04: 38260851-38270850 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068816 5270 Rosid View MSA
123743888 5271 Pentapetalae View MSA
122795257 5272 Eudicot View MSA
122048677 5273 Angiosperm View MSA
121311068 5274 Embryophyte View MSA
123348417 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.37314 0.0 6.48641    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.795174 0.0 2.44412    
cufflinks 0.659848 0.0 2.06769   Low
cufflinks 4.33069 0.0 11.1929   High
cufflinks 2.26715 0.0 6.22942    

0 Strain