Gene : Eucgr.E00052 E. grandis v2.0
Defline:  (1 of 2) PTHR31446:SF4 - ACID PHOSPHATASE/VANADIUM-DEPENDENT HALOPEROXIDASE-RELATED PROTEIN Genomic Order:  47
Name:  ? Eucgr.E00052 Secondary Identifier:  ? PAC:32029336
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.E00052 0.5kb upstream 0.5kb upstream 3439 true Chr05: 480776-484214 Eucalyptus grandis
Eucgr.E00052 0.5kb upstream 0.5kb upstream 500 false Chr05: 483715-484214 Eucalyptus grandis
Eucgr.E00052 0.5kb downstream 0.5kb downstream 3439 true Chr05: 480276-483714 Eucalyptus grandis
Eucgr.E00052 0.5kb downstream 0.5kb downstream 500 false Chr05: 480276-480775 Eucalyptus grandis
Eucgr.E00052 1.0kb upstream 1.0kb upstream 3939 true Chr05: 480776-484714 Eucalyptus grandis
Eucgr.E00052 1.0kb upstream 1.0kb upstream 1000 false Chr05: 483715-484714 Eucalyptus grandis
Eucgr.E00052 1.0kb downstream 1.0kb downstream 3939 true Chr05: 479776-483714 Eucalyptus grandis
Eucgr.E00052 1.0kb downstream 1.0kb downstream 1000 false Chr05: 479776-480775 Eucalyptus grandis
Eucgr.E00052 2.0kb upstream 2.0kb upstream 4939 true Chr05: 480776-485714 Eucalyptus grandis
Eucgr.E00052 2.0kb upstream 2.0kb upstream 2000 false Chr05: 483715-485714 Eucalyptus grandis
Eucgr.E00052 2.0kb downstream 2.0kb downstream 4939 true Chr05: 478776-483714 Eucalyptus grandis
Eucgr.E00052 2.0kb downstream 2.0kb downstream 2000 false Chr05: 478776-480775 Eucalyptus grandis
Eucgr.E00052 5.0kb upstream 5.0kb upstream 7939 true Chr05: 480776-488714 Eucalyptus grandis
Eucgr.E00052 5.0kb upstream 5.0kb upstream 5000 false Chr05: 483715-488714 Eucalyptus grandis
Eucgr.E00052 5.0kb downstream 5.0kb downstream 7939 true Chr05: 475776-483714 Eucalyptus grandis
Eucgr.E00052 5.0kb downstream 5.0kb downstream 5000 false Chr05: 475776-480775 Eucalyptus grandis
Eucgr.E00052 10.0kb upstream 10.0kb upstream 12939 true Chr05: 480776-493714 Eucalyptus grandis
Eucgr.E00052 10.0kb upstream 10.0kb upstream 10000 false Chr05: 483715-493714 Eucalyptus grandis
Eucgr.E00052 10.0kb downstream 10.0kb downstream 12939 true Chr05: 470776-483714 Eucalyptus grandis
Eucgr.E00052 10.0kb downstream 10.0kb downstream 10000 false Chr05: 470776-480775 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124066733 5270 Rosid View MSA
123749818 5271 Pentapetalae View MSA
122786289 5272 Eudicot View MSA
122043661 5273 Angiosperm View MSA
123429132 5275 Viridiplantae View MSA
121346257 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.41662 0.0 18.8677    
cufflinks 7.27017 0.0 18.4588    
cufflinks 4.80299 0.0 12.7733   Low
cufflinks 16.5779 0.0 38.9692   High
cufflinks 16.8664 0.0 39.6242   High
cufflinks 11.4959 0.0 28.0927    

0 Strain