Gene : Eucgr.L00343 E. grandis v2.0
Defline:  (1 of 2) PTHR23198:SF4 - NUCLEOPORIN AUTOPEPTIDASE Genomic Order:  1293
Name:  ? Eucgr.L00343 Secondary Identifier:  ? PAC:32051497
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.L00343 0.5kb upstream 0.5kb upstream 8407 true Chr04: 29010965-29019371 Eucalyptus grandis
Eucgr.L00343 0.5kb upstream 0.5kb upstream 500 false Chr04: 29018872-29019371 Eucalyptus grandis
Eucgr.L00343 0.5kb downstream 0.5kb downstream 8407 true Chr04: 29010465-29018871 Eucalyptus grandis
Eucgr.L00343 0.5kb downstream 0.5kb downstream 500 false Chr04: 29010465-29010964 Eucalyptus grandis
Eucgr.L00343 1.0kb upstream 1.0kb upstream 8907 true Chr04: 29010965-29019871 Eucalyptus grandis
Eucgr.L00343 1.0kb upstream 1.0kb upstream 1000 false Chr04: 29018872-29019871 Eucalyptus grandis
Eucgr.L00343 1.0kb downstream 1.0kb downstream 8907 true Chr04: 29009965-29018871 Eucalyptus grandis
Eucgr.L00343 1.0kb downstream 1.0kb downstream 1000 false Chr04: 29009965-29010964 Eucalyptus grandis
Eucgr.L00343 2.0kb upstream 2.0kb upstream 9907 true Chr04: 29010965-29020871 Eucalyptus grandis
Eucgr.L00343 2.0kb upstream 2.0kb upstream 2000 false Chr04: 29018872-29020871 Eucalyptus grandis
Eucgr.L00343 2.0kb downstream 2.0kb downstream 9907 true Chr04: 29008965-29018871 Eucalyptus grandis
Eucgr.L00343 2.0kb downstream 2.0kb downstream 2000 false Chr04: 29008965-29010964 Eucalyptus grandis
Eucgr.L00343 5.0kb upstream 5.0kb upstream 12907 true Chr04: 29010965-29023871 Eucalyptus grandis
Eucgr.L00343 5.0kb upstream 5.0kb upstream 5000 false Chr04: 29018872-29023871 Eucalyptus grandis
Eucgr.L00343 5.0kb downstream 5.0kb downstream 12907 true Chr04: 29005965-29018871 Eucalyptus grandis
Eucgr.L00343 5.0kb downstream 5.0kb downstream 5000 false Chr04: 29005965-29010964 Eucalyptus grandis
Eucgr.L00343 10.0kb upstream 10.0kb upstream 17907 true Chr04: 29010965-29028871 Eucalyptus grandis
Eucgr.L00343 10.0kb upstream 10.0kb upstream 10000 false Chr04: 29018872-29028871 Eucalyptus grandis
Eucgr.L00343 10.0kb downstream 10.0kb downstream 17907 true Chr04: 29000965-29018871 Eucalyptus grandis
Eucgr.L00343 10.0kb downstream 10.0kb downstream 10000 false Chr04: 29000965-29010964 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124061864 5270 Rosid View MSA
123748776 5271 Pentapetalae View MSA
122797875 5272 Eudicot View MSA
122041710 5273 Angiosperm View MSA
121349617 5274 Embryophyte View MSA
123427472 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.4156 0.0 32.5704    
cufflinks 11.0608 0.0 29.1519    
cufflinks 12.4091 0.0 32.2205    
cufflinks 10.4755 0.0 26.2952   Low
cufflinks 12.0073 0.0 27.0601    
cufflinks 13.8721 0.0 34.555   High

0 Strain