Gene : Eucgr.E00580 E. grandis v2.0
Defline:  (1 of 2) PTHR33317:SF1 - POLYNUCLEOTIDYL TRANSFERASE/ RIBONUCLEASE H-LIKE PROTEIN Genomic Order:  516
Name:  ? Eucgr.E00580 Secondary Identifier:  ? PAC:32030728
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.E00580 0.5kb upstream 0.5kb upstream 1996 true Chr05: 5524558-5526553 Eucalyptus grandis
Eucgr.E00580 0.5kb upstream 0.5kb upstream 500 false Chr05: 5526054-5526553 Eucalyptus grandis
Eucgr.E00580 0.5kb downstream 0.5kb downstream 1996 true Chr05: 5524058-5526053 Eucalyptus grandis
Eucgr.E00580 0.5kb downstream 0.5kb downstream 500 false Chr05: 5524058-5524557 Eucalyptus grandis
Eucgr.E00580 1.0kb upstream 1.0kb upstream 2496 true Chr05: 5524558-5527053 Eucalyptus grandis
Eucgr.E00580 1.0kb upstream 1.0kb upstream 1000 false Chr05: 5526054-5527053 Eucalyptus grandis
Eucgr.E00580 1.0kb downstream 1.0kb downstream 2496 true Chr05: 5523558-5526053 Eucalyptus grandis
Eucgr.E00580 1.0kb downstream 1.0kb downstream 1000 false Chr05: 5523558-5524557 Eucalyptus grandis
Eucgr.E00580 2.0kb upstream 2.0kb upstream 3496 true Chr05: 5524558-5528053 Eucalyptus grandis
Eucgr.E00580 2.0kb upstream 2.0kb upstream 2000 false Chr05: 5526054-5528053 Eucalyptus grandis
Eucgr.E00580 2.0kb downstream 2.0kb downstream 3496 true Chr05: 5522558-5526053 Eucalyptus grandis
Eucgr.E00580 2.0kb downstream 2.0kb downstream 2000 false Chr05: 5522558-5524557 Eucalyptus grandis
Eucgr.E00580 5.0kb upstream 5.0kb upstream 6496 true Chr05: 5524558-5531053 Eucalyptus grandis
Eucgr.E00580 5.0kb upstream 5.0kb upstream 5000 false Chr05: 5526054-5531053 Eucalyptus grandis
Eucgr.E00580 5.0kb downstream 5.0kb downstream 6496 true Chr05: 5519558-5526053 Eucalyptus grandis
Eucgr.E00580 5.0kb downstream 5.0kb downstream 5000 false Chr05: 5519558-5524557 Eucalyptus grandis
Eucgr.E00580 10.0kb upstream 10.0kb upstream 11496 true Chr05: 5524558-5536053 Eucalyptus grandis
Eucgr.E00580 10.0kb upstream 10.0kb upstream 10000 false Chr05: 5526054-5536053 Eucalyptus grandis
Eucgr.E00580 10.0kb downstream 10.0kb downstream 11496 true Chr05: 5514558-5526053 Eucalyptus grandis
Eucgr.E00580 10.0kb downstream 10.0kb downstream 10000 false Chr05: 5514558-5524557 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124043360 5270 Rosid Singleton cluster - no MSA
123746369 5271 Pentapetalae View MSA
122785614 5272 Eudicot View MSA
122048036 5273 Angiosperm View MSA
121349861 5274 Embryophyte View MSA
123381473 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.524816 0.0 1.93305    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.86044 0.0 5.80149    
cufflinks 0.478123 0.0 1.77271    
cufflinks 0.924732 0.0 3.13056    
cufflinks 6.58986 0.0 18.1069   High

0 Strain