Gene : Eucgr.E00578 E. grandis v2.0
Defline:  (1 of 6) PF00122//PF00403//PF12710 - E1-E2 ATPase (E1-E2_ATPase) // Heavy-metal-associated domain (HMA) // haloacid dehalogenase-like hydrolase (HAD) Genomic Order:  514
Name:  ? Eucgr.E00578 Secondary Identifier:  ? PAC:32030227
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.E00578 0.5kb upstream 0.5kb upstream 4614 true Chr05: 5513696-5518309 Eucalyptus grandis
Eucgr.E00578 0.5kb upstream 0.5kb upstream 500 false Chr05: 5513696-5514195 Eucalyptus grandis
Eucgr.E00578 0.5kb downstream 0.5kb downstream 4614 true Chr05: 5514196-5518809 Eucalyptus grandis
Eucgr.E00578 0.5kb downstream 0.5kb downstream 500 false Chr05: 5518310-5518809 Eucalyptus grandis
Eucgr.E00578 1.0kb upstream 1.0kb upstream 5114 true Chr05: 5513196-5518309 Eucalyptus grandis
Eucgr.E00578 1.0kb upstream 1.0kb upstream 1000 false Chr05: 5513196-5514195 Eucalyptus grandis
Eucgr.E00578 1.0kb downstream 1.0kb downstream 5114 true Chr05: 5514196-5519309 Eucalyptus grandis
Eucgr.E00578 1.0kb downstream 1.0kb downstream 1000 false Chr05: 5518310-5519309 Eucalyptus grandis
Eucgr.E00578 2.0kb upstream 2.0kb upstream 6114 true Chr05: 5512196-5518309 Eucalyptus grandis
Eucgr.E00578 2.0kb upstream 2.0kb upstream 2000 false Chr05: 5512196-5514195 Eucalyptus grandis
Eucgr.E00578 2.0kb downstream 2.0kb downstream 6114 true Chr05: 5514196-5520309 Eucalyptus grandis
Eucgr.E00578 2.0kb downstream 2.0kb downstream 2000 false Chr05: 5518310-5520309 Eucalyptus grandis
Eucgr.E00578 5.0kb upstream 5.0kb upstream 9114 true Chr05: 5509196-5518309 Eucalyptus grandis
Eucgr.E00578 5.0kb upstream 5.0kb upstream 5000 false Chr05: 5509196-5514195 Eucalyptus grandis
Eucgr.E00578 5.0kb downstream 5.0kb downstream 9114 true Chr05: 5514196-5523309 Eucalyptus grandis
Eucgr.E00578 5.0kb downstream 5.0kb downstream 5000 false Chr05: 5518310-5523309 Eucalyptus grandis
Eucgr.E00578 10.0kb upstream 10.0kb upstream 14114 true Chr05: 5504196-5518309 Eucalyptus grandis
Eucgr.E00578 10.0kb upstream 10.0kb upstream 10000 false Chr05: 5504196-5514195 Eucalyptus grandis
Eucgr.E00578 10.0kb downstream 10.0kb downstream 14114 true Chr05: 5514196-5528309 Eucalyptus grandis
Eucgr.E00578 10.0kb downstream 10.0kb downstream 10000 false Chr05: 5518310-5528309 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124069663 5270 Rosid View MSA
123747003 5271 Pentapetalae View MSA
122794490 5272 Eudicot View MSA
122042760 5273 Angiosperm View MSA
121351146 5274 Embryophyte View MSA
123426796 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.599893 0.0 1.68387    
cufflinks 12.9949 0.0 28.7519   High
cufflinks 0.694408 0.0 1.92521    
cufflinks 6.76204 0.0 15.2302    
cufflinks 1.90415 0.0 4.76927    
cufflinks 0.361448 0.0 1.06865 Low Low

0 Strain