Gene : Eucgr.E00397 E. grandis v2.0
Defline:  (1 of 33) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  359
Name:  ? Eucgr.E00397 Secondary Identifier:  ? PAC:32030604
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.E00397 0.5kb upstream 0.5kb upstream 6103 true Chr05: 3760022-3766124 Eucalyptus grandis
Eucgr.E00397 0.5kb upstream 0.5kb upstream 500 false Chr05: 3765625-3766124 Eucalyptus grandis
Eucgr.E00397 0.5kb downstream 0.5kb downstream 6103 true Chr05: 3759522-3765624 Eucalyptus grandis
Eucgr.E00397 0.5kb downstream 0.5kb downstream 500 false Chr05: 3759522-3760021 Eucalyptus grandis
Eucgr.E00397 1.0kb upstream 1.0kb upstream 6603 true Chr05: 3760022-3766624 Eucalyptus grandis
Eucgr.E00397 1.0kb upstream 1.0kb upstream 1000 false Chr05: 3765625-3766624 Eucalyptus grandis
Eucgr.E00397 1.0kb downstream 1.0kb downstream 6603 true Chr05: 3759022-3765624 Eucalyptus grandis
Eucgr.E00397 1.0kb downstream 1.0kb downstream 1000 false Chr05: 3759022-3760021 Eucalyptus grandis
Eucgr.E00397 2.0kb upstream 2.0kb upstream 7603 true Chr05: 3760022-3767624 Eucalyptus grandis
Eucgr.E00397 2.0kb upstream 2.0kb upstream 2000 false Chr05: 3765625-3767624 Eucalyptus grandis
Eucgr.E00397 2.0kb downstream 2.0kb downstream 7603 true Chr05: 3758022-3765624 Eucalyptus grandis
Eucgr.E00397 2.0kb downstream 2.0kb downstream 2000 false Chr05: 3758022-3760021 Eucalyptus grandis
Eucgr.E00397 5.0kb upstream 5.0kb upstream 10603 true Chr05: 3760022-3770624 Eucalyptus grandis
Eucgr.E00397 5.0kb upstream 5.0kb upstream 5000 false Chr05: 3765625-3770624 Eucalyptus grandis
Eucgr.E00397 5.0kb downstream 5.0kb downstream 10603 true Chr05: 3755022-3765624 Eucalyptus grandis
Eucgr.E00397 5.0kb downstream 5.0kb downstream 5000 false Chr05: 3755022-3760021 Eucalyptus grandis
Eucgr.E00397 10.0kb upstream 10.0kb upstream 15603 true Chr05: 3760022-3775624 Eucalyptus grandis
Eucgr.E00397 10.0kb upstream 10.0kb upstream 10000 false Chr05: 3765625-3775624 Eucalyptus grandis
Eucgr.E00397 10.0kb downstream 10.0kb downstream 15603 true Chr05: 3750022-3765624 Eucalyptus grandis
Eucgr.E00397 10.0kb downstream 10.0kb downstream 10000 false Chr05: 3750022-3760021 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124066946 5270 Rosid View MSA
123748514 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.65623 0.0 11.2787    
cufflinks 5.19786 0.0 12.3251   High
cufflinks 3.86429 0.0 9.56505    
cufflinks 2.17898 0.0 5.87316   Low
cufflinks 3.5672 0.0 8.94191    
cufflinks 2.93009 0.0 7.65543    

0 Strain