Gene : Eucgr.E01069 E. grandis v2.0
Defline:  (1 of 2) PTHR11516:SF25 - PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA-3, CHLOROPLASTIC Genomic Order:  840
Name:  ? Eucgr.E01069 Secondary Identifier:  ? PAC:32029289
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-5173 Eucalyptus grandis pathologic  
Egrandis PWY-5464 Eucalyptus grandis pathologic  
Egrandis PYRUVDEHYD-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.E01069 0.5kb upstream 0.5kb upstream 5317 true Chr05: 10379001-10384317 Eucalyptus grandis
Eucgr.E01069 0.5kb upstream 0.5kb upstream 500 false Chr05: 10379001-10379500 Eucalyptus grandis
Eucgr.E01069 0.5kb downstream 0.5kb downstream 5317 true Chr05: 10379501-10384817 Eucalyptus grandis
Eucgr.E01069 0.5kb downstream 0.5kb downstream 500 false Chr05: 10384318-10384817 Eucalyptus grandis
Eucgr.E01069 1.0kb upstream 1.0kb upstream 5817 true Chr05: 10378501-10384317 Eucalyptus grandis
Eucgr.E01069 1.0kb upstream 1.0kb upstream 1000 false Chr05: 10378501-10379500 Eucalyptus grandis
Eucgr.E01069 1.0kb downstream 1.0kb downstream 5817 true Chr05: 10379501-10385317 Eucalyptus grandis
Eucgr.E01069 1.0kb downstream 1.0kb downstream 1000 false Chr05: 10384318-10385317 Eucalyptus grandis
Eucgr.E01069 2.0kb upstream 2.0kb upstream 6817 true Chr05: 10377501-10384317 Eucalyptus grandis
Eucgr.E01069 2.0kb upstream 2.0kb upstream 2000 false Chr05: 10377501-10379500 Eucalyptus grandis
Eucgr.E01069 2.0kb downstream 2.0kb downstream 6817 true Chr05: 10379501-10386317 Eucalyptus grandis
Eucgr.E01069 2.0kb downstream 2.0kb downstream 2000 false Chr05: 10384318-10386317 Eucalyptus grandis
Eucgr.E01069 5.0kb upstream 5.0kb upstream 9817 true Chr05: 10374501-10384317 Eucalyptus grandis
Eucgr.E01069 5.0kb upstream 5.0kb upstream 5000 false Chr05: 10374501-10379500 Eucalyptus grandis
Eucgr.E01069 5.0kb downstream 5.0kb downstream 9817 true Chr05: 10379501-10389317 Eucalyptus grandis
Eucgr.E01069 5.0kb downstream 5.0kb downstream 5000 false Chr05: 10384318-10389317 Eucalyptus grandis
Eucgr.E01069 10.0kb upstream 10.0kb upstream 14817 true Chr05: 10369501-10384317 Eucalyptus grandis
Eucgr.E01069 10.0kb upstream 10.0kb upstream 10000 false Chr05: 10369501-10379500 Eucalyptus grandis
Eucgr.E01069 10.0kb downstream 10.0kb downstream 14817 true Chr05: 10379501-10394317 Eucalyptus grandis
Eucgr.E01069 10.0kb downstream 10.0kb downstream 10000 false Chr05: 10384318-10394317 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124066481 5270 Rosid View MSA
123745685 5271 Pentapetalae View MSA
122791580 5272 Eudicot View MSA
122044804 5273 Angiosperm View MSA
121347425 5274 Embryophyte View MSA
123423942 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.5662 0.0 27.006    
cufflinks 4.32158 0.0 10.3067    
cufflinks 11.7082 0.0 31.3325    
cufflinks 3.53507 0.0 10.6211    
cufflinks 2.45758 0.0 7.91826   Low
cufflinks 19.0884 0.0 51.3552   High

0 Strain