Gene : Eucgr.E01909 E. grandis v2.0
Defline:  (1 of 1) PTHR11624:SF76 - PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT BETA-2, CHLOROPLASTIC-RELATED Genomic Order:  1485
Name:  ? Eucgr.E01909 Secondary Identifier:  ? PAC:32030656
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-5173 Eucalyptus grandis pathologic  
Egrandis PWY-5464 Eucalyptus grandis pathologic  
Egrandis PYRUVDEHYD-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.E01909 0.5kb upstream 0.5kb upstream 4610 true Chr05: 24801709-24806318 Eucalyptus grandis
Eucgr.E01909 0.5kb upstream 0.5kb upstream 500 false Chr05: 24801709-24802208 Eucalyptus grandis
Eucgr.E01909 0.5kb downstream 0.5kb downstream 4610 true Chr05: 24802209-24806818 Eucalyptus grandis
Eucgr.E01909 0.5kb downstream 0.5kb downstream 500 false Chr05: 24806319-24806818 Eucalyptus grandis
Eucgr.E01909 1.0kb upstream 1.0kb upstream 5110 true Chr05: 24801209-24806318 Eucalyptus grandis
Eucgr.E01909 1.0kb upstream 1.0kb upstream 1000 false Chr05: 24801209-24802208 Eucalyptus grandis
Eucgr.E01909 1.0kb downstream 1.0kb downstream 5110 true Chr05: 24802209-24807318 Eucalyptus grandis
Eucgr.E01909 1.0kb downstream 1.0kb downstream 1000 false Chr05: 24806319-24807318 Eucalyptus grandis
Eucgr.E01909 2.0kb upstream 2.0kb upstream 6110 true Chr05: 24800209-24806318 Eucalyptus grandis
Eucgr.E01909 2.0kb upstream 2.0kb upstream 2000 false Chr05: 24800209-24802208 Eucalyptus grandis
Eucgr.E01909 2.0kb downstream 2.0kb downstream 6110 true Chr05: 24802209-24808318 Eucalyptus grandis
Eucgr.E01909 2.0kb downstream 2.0kb downstream 2000 false Chr05: 24806319-24808318 Eucalyptus grandis
Eucgr.E01909 5.0kb upstream 5.0kb upstream 9110 true Chr05: 24797209-24806318 Eucalyptus grandis
Eucgr.E01909 5.0kb upstream 5.0kb upstream 5000 false Chr05: 24797209-24802208 Eucalyptus grandis
Eucgr.E01909 5.0kb downstream 5.0kb downstream 9110 true Chr05: 24802209-24811318 Eucalyptus grandis
Eucgr.E01909 5.0kb downstream 5.0kb downstream 5000 false Chr05: 24806319-24811318 Eucalyptus grandis
Eucgr.E01909 10.0kb upstream 10.0kb upstream 14110 true Chr05: 24792209-24806318 Eucalyptus grandis
Eucgr.E01909 10.0kb upstream 10.0kb upstream 10000 false Chr05: 24792209-24802208 Eucalyptus grandis
Eucgr.E01909 10.0kb downstream 10.0kb downstream 14110 true Chr05: 24802209-24816318 Eucalyptus grandis
Eucgr.E01909 10.0kb downstream 10.0kb downstream 10000 false Chr05: 24806319-24816318 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062960 5270 Rosid View MSA
123741192 5271 Pentapetalae View MSA
122797029 5272 Eudicot View MSA
122045305 5273 Angiosperm View MSA
121346397 5274 Embryophyte View MSA
123428672 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.1334 0.0 68.2496    
cufflinks 16.8415 0.0 38.9737    
cufflinks 26.4257 0.0 68.4237 High  
cufflinks 15.274 0.0 39.9146    
cufflinks 12.432 0.0 29.7596   Low
cufflinks 36.8732 0.0 83.7951 High High

0 Strain