Gene : Eucgr.E01418 E. grandis v2.0
Defline:  (1 of 1) KOG2326 - DNA-binding subunit of a DNA-dependent protein kinase (Ku80 autoantigen) Genomic Order:  1115
Name:  ? Eucgr.E01418 Secondary Identifier:  ? PAC:32030302
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.E01418 0.5kb upstream 0.5kb upstream 8140 true Chr05: 15027953-15036092 Eucalyptus grandis
Eucgr.E01418 0.5kb upstream 0.5kb upstream 500 false Chr05: 15027953-15028452 Eucalyptus grandis
Eucgr.E01418 0.5kb downstream 0.5kb downstream 8140 true Chr05: 15028453-15036592 Eucalyptus grandis
Eucgr.E01418 0.5kb downstream 0.5kb downstream 500 false Chr05: 15036093-15036592 Eucalyptus grandis
Eucgr.E01418 1.0kb upstream 1.0kb upstream 8640 true Chr05: 15027453-15036092 Eucalyptus grandis
Eucgr.E01418 1.0kb upstream 1.0kb upstream 1000 false Chr05: 15027453-15028452 Eucalyptus grandis
Eucgr.E01418 1.0kb downstream 1.0kb downstream 8640 true Chr05: 15028453-15037092 Eucalyptus grandis
Eucgr.E01418 1.0kb downstream 1.0kb downstream 1000 false Chr05: 15036093-15037092 Eucalyptus grandis
Eucgr.E01418 2.0kb upstream 2.0kb upstream 9640 true Chr05: 15026453-15036092 Eucalyptus grandis
Eucgr.E01418 2.0kb upstream 2.0kb upstream 2000 false Chr05: 15026453-15028452 Eucalyptus grandis
Eucgr.E01418 2.0kb downstream 2.0kb downstream 9640 true Chr05: 15028453-15038092 Eucalyptus grandis
Eucgr.E01418 2.0kb downstream 2.0kb downstream 2000 false Chr05: 15036093-15038092 Eucalyptus grandis
Eucgr.E01418 5.0kb upstream 5.0kb upstream 12640 true Chr05: 15023453-15036092 Eucalyptus grandis
Eucgr.E01418 5.0kb upstream 5.0kb upstream 5000 false Chr05: 15023453-15028452 Eucalyptus grandis
Eucgr.E01418 5.0kb downstream 5.0kb downstream 12640 true Chr05: 15028453-15041092 Eucalyptus grandis
Eucgr.E01418 5.0kb downstream 5.0kb downstream 5000 false Chr05: 15036093-15041092 Eucalyptus grandis
Eucgr.E01418 10.0kb upstream 10.0kb upstream 17640 true Chr05: 15018453-15036092 Eucalyptus grandis
Eucgr.E01418 10.0kb upstream 10.0kb upstream 10000 false Chr05: 15018453-15028452 Eucalyptus grandis
Eucgr.E01418 10.0kb downstream 10.0kb downstream 17640 true Chr05: 15028453-15046092 Eucalyptus grandis
Eucgr.E01418 10.0kb downstream 10.0kb downstream 10000 false Chr05: 15036093-15046092 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124065109 5270 Rosid View MSA
123746123 5271 Pentapetalae View MSA
122786375 5272 Eudicot View MSA
122050480 5273 Angiosperm View MSA
121345940 5274 Embryophyte View MSA
123427822 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.3353 0.0 12.5056    
cufflinks 4.5127 0.0 11.9548    
cufflinks 5.75482 0.0 17.4404   High
cufflinks 3.3867 0.0 10.098   Low
cufflinks 5.21185 0.0 12.2041    
cufflinks 3.68771 0.0 9.2816    

0 Strain