Gene : Eucgr.E02358 E. grandis v2.0
Defline:  (1 of 1) PTHR33596:SF3 - COLD-REGULATED 413 INNER MEMBRANE PROTEIN 1, CHLOROPLASTIC-RELATED Genomic Order:  1840
Name:  ? Eucgr.E02358 Secondary Identifier:  ? PAC:32028899
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.E02358 0.5kb upstream 0.5kb upstream 3351 true Chr05: 35282628-35285978 Eucalyptus grandis
Eucgr.E02358 0.5kb upstream 0.5kb upstream 500 false Chr05: 35285479-35285978 Eucalyptus grandis
Eucgr.E02358 0.5kb downstream 0.5kb downstream 3351 true Chr05: 35282128-35285478 Eucalyptus grandis
Eucgr.E02358 0.5kb downstream 0.5kb downstream 500 false Chr05: 35282128-35282627 Eucalyptus grandis
Eucgr.E02358 1.0kb upstream 1.0kb upstream 3851 true Chr05: 35282628-35286478 Eucalyptus grandis
Eucgr.E02358 1.0kb upstream 1.0kb upstream 1000 false Chr05: 35285479-35286478 Eucalyptus grandis
Eucgr.E02358 1.0kb downstream 1.0kb downstream 3851 true Chr05: 35281628-35285478 Eucalyptus grandis
Eucgr.E02358 1.0kb downstream 1.0kb downstream 1000 false Chr05: 35281628-35282627 Eucalyptus grandis
Eucgr.E02358 2.0kb upstream 2.0kb upstream 4851 true Chr05: 35282628-35287478 Eucalyptus grandis
Eucgr.E02358 2.0kb upstream 2.0kb upstream 2000 false Chr05: 35285479-35287478 Eucalyptus grandis
Eucgr.E02358 2.0kb downstream 2.0kb downstream 4851 true Chr05: 35280628-35285478 Eucalyptus grandis
Eucgr.E02358 2.0kb downstream 2.0kb downstream 2000 false Chr05: 35280628-35282627 Eucalyptus grandis
Eucgr.E02358 5.0kb upstream 5.0kb upstream 7851 true Chr05: 35282628-35290478 Eucalyptus grandis
Eucgr.E02358 5.0kb upstream 5.0kb upstream 5000 false Chr05: 35285479-35290478 Eucalyptus grandis
Eucgr.E02358 5.0kb downstream 5.0kb downstream 7851 true Chr05: 35277628-35285478 Eucalyptus grandis
Eucgr.E02358 5.0kb downstream 5.0kb downstream 5000 false Chr05: 35277628-35282627 Eucalyptus grandis
Eucgr.E02358 10.0kb upstream 10.0kb upstream 12851 true Chr05: 35282628-35295478 Eucalyptus grandis
Eucgr.E02358 10.0kb upstream 10.0kb upstream 10000 false Chr05: 35285479-35295478 Eucalyptus grandis
Eucgr.E02358 10.0kb downstream 10.0kb downstream 12851 true Chr05: 35272628-35285478 Eucalyptus grandis
Eucgr.E02358 10.0kb downstream 10.0kb downstream 10000 false Chr05: 35272628-35282627 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026496 5273 Angiosperm View MSA
124068573 5270 Rosid View MSA
123739751 5271 Pentapetalae View MSA
122786208 5272 Eudicot View MSA
121350668 5274 Embryophyte View MSA
123381843 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.55449 0.0 19.2921   Low
cufflinks 28.053 0.0 63.6067    
cufflinks 11.8335 0.0 28.9069    
cufflinks 27.8584 0.0 63.2292    
cufflinks 62.0797 0.0 137.337 High High
cufflinks 52.9064 0.0 117.281 High  

0 Strain