Gene : Eucgr.E03323 E. grandis v2.0
Defline:  (1 of 2) PTHR13152 - TFIIH, POLYPEPTIDE 4 Genomic Order:  2419
Name:  ? Eucgr.E03323 Secondary Identifier:  ? PAC:32028973
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.E03323 0.5kb upstream 0.5kb upstream 9078 true Chr05: 54766082-54775159 Eucalyptus grandis
Eucgr.E03323 0.5kb upstream 0.5kb upstream 500 false Chr05: 54766082-54766581 Eucalyptus grandis
Eucgr.E03323 0.5kb downstream 0.5kb downstream 9078 true Chr05: 54766582-54775659 Eucalyptus grandis
Eucgr.E03323 0.5kb downstream 0.5kb downstream 500 false Chr05: 54775160-54775659 Eucalyptus grandis
Eucgr.E03323 1.0kb upstream 1.0kb upstream 9578 true Chr05: 54765582-54775159 Eucalyptus grandis
Eucgr.E03323 1.0kb upstream 1.0kb upstream 1000 false Chr05: 54765582-54766581 Eucalyptus grandis
Eucgr.E03323 1.0kb downstream 1.0kb downstream 9578 true Chr05: 54766582-54776159 Eucalyptus grandis
Eucgr.E03323 1.0kb downstream 1.0kb downstream 1000 false Chr05: 54775160-54776159 Eucalyptus grandis
Eucgr.E03323 2.0kb upstream 2.0kb upstream 10578 true Chr05: 54764582-54775159 Eucalyptus grandis
Eucgr.E03323 2.0kb upstream 2.0kb upstream 2000 false Chr05: 54764582-54766581 Eucalyptus grandis
Eucgr.E03323 2.0kb downstream 2.0kb downstream 10578 true Chr05: 54766582-54777159 Eucalyptus grandis
Eucgr.E03323 2.0kb downstream 2.0kb downstream 2000 false Chr05: 54775160-54777159 Eucalyptus grandis
Eucgr.E03323 5.0kb upstream 5.0kb upstream 13578 true Chr05: 54761582-54775159 Eucalyptus grandis
Eucgr.E03323 5.0kb upstream 5.0kb upstream 5000 false Chr05: 54761582-54766581 Eucalyptus grandis
Eucgr.E03323 5.0kb downstream 5.0kb downstream 13578 true Chr05: 54766582-54780159 Eucalyptus grandis
Eucgr.E03323 5.0kb downstream 5.0kb downstream 5000 false Chr05: 54775160-54780159 Eucalyptus grandis
Eucgr.E03323 10.0kb upstream 10.0kb upstream 18578 true Chr05: 54756582-54775159 Eucalyptus grandis
Eucgr.E03323 10.0kb upstream 10.0kb upstream 10000 false Chr05: 54756582-54766581 Eucalyptus grandis
Eucgr.E03323 10.0kb downstream 10.0kb downstream 18578 true Chr05: 54766582-54785159 Eucalyptus grandis
Eucgr.E03323 10.0kb downstream 10.0kb downstream 10000 false Chr05: 54775160-54785159 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124050287 5270 Rosid View MSA
123747685 5271 Pentapetalae View MSA
122797891 5272 Eudicot View MSA
122042198 5273 Angiosperm View MSA
121346770 5274 Embryophyte View MSA
123427579 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.61335 0.0 11.5107    
cufflinks 7.69278 0.0 17.8635   High
cufflinks 5.07864 0.0 12.4175    
cufflinks 6.48195 0.0 17.1656    
cufflinks 5.65411 0.0 13.5259    
cufflinks 3.79801 0.0 9.80992   Low

0 Strain