Gene : Eucgr.E03251 E. grandis v2.0
Defline:  (1 of 78) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  2363
Name:  ? Eucgr.E03251 Secondary Identifier:  ? PAC:32031088
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.E03251 0.5kb upstream 0.5kb upstream 2852 true Chr05: 53601609-53604460 Eucalyptus grandis
Eucgr.E03251 0.5kb upstream 0.5kb upstream 500 false Chr05: 53601609-53602108 Eucalyptus grandis
Eucgr.E03251 0.5kb downstream 0.5kb downstream 2852 true Chr05: 53602109-53604960 Eucalyptus grandis
Eucgr.E03251 0.5kb downstream 0.5kb downstream 500 false Chr05: 53604461-53604960 Eucalyptus grandis
Eucgr.E03251 1.0kb upstream 1.0kb upstream 3352 true Chr05: 53601109-53604460 Eucalyptus grandis
Eucgr.E03251 1.0kb upstream 1.0kb upstream 1000 false Chr05: 53601109-53602108 Eucalyptus grandis
Eucgr.E03251 1.0kb downstream 1.0kb downstream 3352 true Chr05: 53602109-53605460 Eucalyptus grandis
Eucgr.E03251 1.0kb downstream 1.0kb downstream 1000 false Chr05: 53604461-53605460 Eucalyptus grandis
Eucgr.E03251 2.0kb upstream 2.0kb upstream 4352 true Chr05: 53600109-53604460 Eucalyptus grandis
Eucgr.E03251 2.0kb upstream 2.0kb upstream 2000 false Chr05: 53600109-53602108 Eucalyptus grandis
Eucgr.E03251 2.0kb downstream 2.0kb downstream 4352 true Chr05: 53602109-53606460 Eucalyptus grandis
Eucgr.E03251 2.0kb downstream 2.0kb downstream 2000 false Chr05: 53604461-53606460 Eucalyptus grandis
Eucgr.E03251 5.0kb upstream 5.0kb upstream 7352 true Chr05: 53597109-53604460 Eucalyptus grandis
Eucgr.E03251 5.0kb upstream 5.0kb upstream 5000 false Chr05: 53597109-53602108 Eucalyptus grandis
Eucgr.E03251 5.0kb downstream 5.0kb downstream 7352 true Chr05: 53602109-53609460 Eucalyptus grandis
Eucgr.E03251 5.0kb downstream 5.0kb downstream 5000 false Chr05: 53604461-53609460 Eucalyptus grandis
Eucgr.E03251 10.0kb upstream 10.0kb upstream 12352 true Chr05: 53592109-53604460 Eucalyptus grandis
Eucgr.E03251 10.0kb upstream 10.0kb upstream 10000 false Chr05: 53592109-53602108 Eucalyptus grandis
Eucgr.E03251 10.0kb downstream 10.0kb downstream 12352 true Chr05: 53602109-53614460 Eucalyptus grandis
Eucgr.E03251 10.0kb downstream 10.0kb downstream 10000 false Chr05: 53604461-53614460 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124070333 5270 Rosid View MSA
123744746 5271 Pentapetalae View MSA
122794994 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.040044 0.0 1.07777 Low Low
cufflinks 0.116695 0.0 2.62662 Low  
cufflinks 0.199792 0.0 2.62307 Low  
cufflinks 0.0344259 0.0 1.23442 Low Low
cufflinks 0.321204 0.0 4.5645 Low  
cufflinks 0.392652 0.0 4.05944 Low High

0 Strain