Gene : Eucgr.E02757 E. grandis v2.0
Defline:  (1 of 1) PTHR23163:SF3 - E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 Genomic Order:  2205
Name:  ? Eucgr.E02757 Secondary Identifier:  ? PAC:32031717
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-7511 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.E02757 0.5kb upstream 0.5kb upstream 12379 true Chr05: 48878832-48891210 Eucalyptus grandis
Eucgr.E02757 0.5kb upstream 0.5kb upstream 500 false Chr05: 48890711-48891210 Eucalyptus grandis
Eucgr.E02757 0.5kb downstream 0.5kb downstream 12379 true Chr05: 48878332-48890710 Eucalyptus grandis
Eucgr.E02757 0.5kb downstream 0.5kb downstream 500 false Chr05: 48878332-48878831 Eucalyptus grandis
Eucgr.E02757 1.0kb upstream 1.0kb upstream 12879 true Chr05: 48878832-48891710 Eucalyptus grandis
Eucgr.E02757 1.0kb upstream 1.0kb upstream 1000 false Chr05: 48890711-48891710 Eucalyptus grandis
Eucgr.E02757 1.0kb downstream 1.0kb downstream 12879 true Chr05: 48877832-48890710 Eucalyptus grandis
Eucgr.E02757 1.0kb downstream 1.0kb downstream 1000 false Chr05: 48877832-48878831 Eucalyptus grandis
Eucgr.E02757 2.0kb upstream 2.0kb upstream 13879 true Chr05: 48878832-48892710 Eucalyptus grandis
Eucgr.E02757 2.0kb upstream 2.0kb upstream 2000 false Chr05: 48890711-48892710 Eucalyptus grandis
Eucgr.E02757 2.0kb downstream 2.0kb downstream 13879 true Chr05: 48876832-48890710 Eucalyptus grandis
Eucgr.E02757 2.0kb downstream 2.0kb downstream 2000 false Chr05: 48876832-48878831 Eucalyptus grandis
Eucgr.E02757 5.0kb upstream 5.0kb upstream 16879 true Chr05: 48878832-48895710 Eucalyptus grandis
Eucgr.E02757 5.0kb upstream 5.0kb upstream 5000 false Chr05: 48890711-48895710 Eucalyptus grandis
Eucgr.E02757 5.0kb downstream 5.0kb downstream 16879 true Chr05: 48873832-48890710 Eucalyptus grandis
Eucgr.E02757 5.0kb downstream 5.0kb downstream 5000 false Chr05: 48873832-48878831 Eucalyptus grandis
Eucgr.E02757 10.0kb upstream 10.0kb upstream 21879 true Chr05: 48878832-48900710 Eucalyptus grandis
Eucgr.E02757 10.0kb upstream 10.0kb upstream 10000 false Chr05: 48890711-48900710 Eucalyptus grandis
Eucgr.E02757 10.0kb downstream 10.0kb downstream 21879 true Chr05: 48868832-48890710 Eucalyptus grandis
Eucgr.E02757 10.0kb downstream 10.0kb downstream 10000 false Chr05: 48868832-48878831 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124061906 5270 Rosid View MSA
123753299 5271 Pentapetalae View MSA
122793673 5272 Eudicot View MSA
122042098 5273 Angiosperm View MSA
121349326 5274 Embryophyte View MSA
123423997 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.10682 0.0 13.821    
cufflinks 8.78572 0.0 19.5434   High
cufflinks 5.86221 0.0 13.2595    
cufflinks 4.03231 0.0 9.33407   Low
cufflinks 7.10164 0.0 15.9226    
cufflinks 6.9018 0.0 15.5633    

0 Strain