Gene : Eucgr.E03997 E. grandis v2.0
Defline:  (1 of 2) 6.1.1.4 - Leucine--tRNA ligase / Leucyl-tRNA synthetase Genomic Order:  3011
Name:  ? Eucgr.E03997 Secondary Identifier:  ? PAC:32031883
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis TRNA-CHARGING-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.E03997 0.5kb upstream 0.5kb upstream 7252 true Chr05: 71557260-71564511 Eucalyptus grandis
Eucgr.E03997 0.5kb upstream 0.5kb upstream 500 false Chr05: 71564012-71564511 Eucalyptus grandis
Eucgr.E03997 0.5kb downstream 0.5kb downstream 7252 true Chr05: 71556760-71564011 Eucalyptus grandis
Eucgr.E03997 0.5kb downstream 0.5kb downstream 500 false Chr05: 71556760-71557259 Eucalyptus grandis
Eucgr.E03997 1.0kb upstream 1.0kb upstream 7752 true Chr05: 71557260-71565011 Eucalyptus grandis
Eucgr.E03997 1.0kb upstream 1.0kb upstream 1000 false Chr05: 71564012-71565011 Eucalyptus grandis
Eucgr.E03997 1.0kb downstream 1.0kb downstream 7752 true Chr05: 71556260-71564011 Eucalyptus grandis
Eucgr.E03997 1.0kb downstream 1.0kb downstream 1000 false Chr05: 71556260-71557259 Eucalyptus grandis
Eucgr.E03997 2.0kb upstream 2.0kb upstream 8752 true Chr05: 71557260-71566011 Eucalyptus grandis
Eucgr.E03997 2.0kb upstream 2.0kb upstream 2000 false Chr05: 71564012-71566011 Eucalyptus grandis
Eucgr.E03997 2.0kb downstream 2.0kb downstream 8752 true Chr05: 71555260-71564011 Eucalyptus grandis
Eucgr.E03997 2.0kb downstream 2.0kb downstream 2000 false Chr05: 71555260-71557259 Eucalyptus grandis
Eucgr.E03997 5.0kb upstream 5.0kb upstream 11752 true Chr05: 71557260-71569011 Eucalyptus grandis
Eucgr.E03997 5.0kb upstream 5.0kb upstream 5000 false Chr05: 71564012-71569011 Eucalyptus grandis
Eucgr.E03997 5.0kb downstream 5.0kb downstream 11752 true Chr05: 71552260-71564011 Eucalyptus grandis
Eucgr.E03997 5.0kb downstream 5.0kb downstream 5000 false Chr05: 71552260-71557259 Eucalyptus grandis
Eucgr.E03997 10.0kb upstream 10.0kb upstream 16752 true Chr05: 71557260-71574011 Eucalyptus grandis
Eucgr.E03997 10.0kb upstream 10.0kb upstream 10000 false Chr05: 71564012-71574011 Eucalyptus grandis
Eucgr.E03997 10.0kb downstream 10.0kb downstream 16752 true Chr05: 71547260-71564011 Eucalyptus grandis
Eucgr.E03997 10.0kb downstream 10.0kb downstream 10000 false Chr05: 71547260-71557259 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041369 5273 Angiosperm View MSA
124073421 5270 Rosid View MSA
123749958 5271 Pentapetalae View MSA
122789048 5272 Eudicot View MSA
121347479 5274 Embryophyte View MSA
123424257 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.70131 0.0 6.44821    
cufflinks 1.07634 0.0 2.80219    
cufflinks 1.72251 0.0 4.28193    
cufflinks 0.503809 0.0 1.40875    
cufflinks 0.106229 0.0 0.359623 Low Low
cufflinks 9.39192 0.0 20.8331   High

0 Strain