Gene : Eucgr.E03460 E. grandis v2.0
Defline:  (1 of 2) PTHR12937 - VACUOLAR PROTEIN SORTING 28, ISOFORM 2 VPS28 Genomic Order:  2607
Name:  ? Eucgr.E03460 Secondary Identifier:  ? PAC:32030128
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.E03460 0.5kb upstream 0.5kb upstream 2381 true Chr05: 60763030-60765410 Eucalyptus grandis
Eucgr.E03460 0.5kb upstream 0.5kb upstream 500 false Chr05: 60763030-60763529 Eucalyptus grandis
Eucgr.E03460 0.5kb downstream 0.5kb downstream 2381 true Chr05: 60763530-60765910 Eucalyptus grandis
Eucgr.E03460 0.5kb downstream 0.5kb downstream 500 false Chr05: 60765411-60765910 Eucalyptus grandis
Eucgr.E03460 1.0kb upstream 1.0kb upstream 2881 true Chr05: 60762530-60765410 Eucalyptus grandis
Eucgr.E03460 1.0kb upstream 1.0kb upstream 1000 false Chr05: 60762530-60763529 Eucalyptus grandis
Eucgr.E03460 1.0kb downstream 1.0kb downstream 2881 true Chr05: 60763530-60766410 Eucalyptus grandis
Eucgr.E03460 1.0kb downstream 1.0kb downstream 1000 false Chr05: 60765411-60766410 Eucalyptus grandis
Eucgr.E03460 2.0kb upstream 2.0kb upstream 3881 true Chr05: 60761530-60765410 Eucalyptus grandis
Eucgr.E03460 2.0kb upstream 2.0kb upstream 2000 false Chr05: 60761530-60763529 Eucalyptus grandis
Eucgr.E03460 2.0kb downstream 2.0kb downstream 3881 true Chr05: 60763530-60767410 Eucalyptus grandis
Eucgr.E03460 2.0kb downstream 2.0kb downstream 2000 false Chr05: 60765411-60767410 Eucalyptus grandis
Eucgr.E03460 5.0kb upstream 5.0kb upstream 6881 true Chr05: 60758530-60765410 Eucalyptus grandis
Eucgr.E03460 5.0kb upstream 5.0kb upstream 5000 false Chr05: 60758530-60763529 Eucalyptus grandis
Eucgr.E03460 5.0kb downstream 5.0kb downstream 6881 true Chr05: 60763530-60770410 Eucalyptus grandis
Eucgr.E03460 5.0kb downstream 5.0kb downstream 5000 false Chr05: 60765411-60770410 Eucalyptus grandis
Eucgr.E03460 10.0kb upstream 10.0kb upstream 11881 true Chr05: 60753530-60765410 Eucalyptus grandis
Eucgr.E03460 10.0kb upstream 10.0kb upstream 10000 false Chr05: 60753530-60763529 Eucalyptus grandis
Eucgr.E03460 10.0kb downstream 10.0kb downstream 11881 true Chr05: 60763530-60775410 Eucalyptus grandis
Eucgr.E03460 10.0kb downstream 10.0kb downstream 10000 false Chr05: 60765411-60775410 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124064645 5270 Rosid View MSA
123751452 5271 Pentapetalae View MSA
122791006 5272 Eudicot View MSA
122044389 5273 Angiosperm View MSA
121350792 5274 Embryophyte View MSA
123425897 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.618 0.0 38.3345    
cufflinks 40.485 0.0 89.6646   High
cufflinks 16.9795 0.0 39.1665    
cufflinks 31.3063 0.0 69.7981    
cufflinks 39.0144 0.0 86.4572 High High
cufflinks 17.9491 0.0 41.2409    

0 Strain