Gene : Eucgr.A00492 E. grandis v2.0
Defline:  (1 of 2) PTHR13286:SF6 - HISTONE DEACETYLASE COMPLEX SUBUNIT SAP30L Genomic Order:  1790
Name:  ? Eucgr.A00492 Secondary Identifier:  ? PAC:32053150
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A00492 0.5kb upstream 0.5kb upstream 3963 true Chr06: 29524674-29528636 Eucalyptus grandis
Eucgr.A00492 0.5kb upstream 0.5kb upstream 500 false Chr06: 29524674-29525173 Eucalyptus grandis
Eucgr.A00492 0.5kb downstream 0.5kb downstream 3963 true Chr06: 29525174-29529136 Eucalyptus grandis
Eucgr.A00492 0.5kb downstream 0.5kb downstream 500 false Chr06: 29528637-29529136 Eucalyptus grandis
Eucgr.A00492 1.0kb upstream 1.0kb upstream 4463 true Chr06: 29524174-29528636 Eucalyptus grandis
Eucgr.A00492 1.0kb upstream 1.0kb upstream 1000 false Chr06: 29524174-29525173 Eucalyptus grandis
Eucgr.A00492 1.0kb downstream 1.0kb downstream 4463 true Chr06: 29525174-29529636 Eucalyptus grandis
Eucgr.A00492 1.0kb downstream 1.0kb downstream 1000 false Chr06: 29528637-29529636 Eucalyptus grandis
Eucgr.A00492 2.0kb upstream 2.0kb upstream 5463 true Chr06: 29523174-29528636 Eucalyptus grandis
Eucgr.A00492 2.0kb upstream 2.0kb upstream 2000 false Chr06: 29523174-29525173 Eucalyptus grandis
Eucgr.A00492 2.0kb downstream 2.0kb downstream 5463 true Chr06: 29525174-29530636 Eucalyptus grandis
Eucgr.A00492 2.0kb downstream 2.0kb downstream 2000 false Chr06: 29528637-29530636 Eucalyptus grandis
Eucgr.A00492 5.0kb upstream 5.0kb upstream 8463 true Chr06: 29520174-29528636 Eucalyptus grandis
Eucgr.A00492 5.0kb upstream 5.0kb upstream 5000 false Chr06: 29520174-29525173 Eucalyptus grandis
Eucgr.A00492 5.0kb downstream 5.0kb downstream 8463 true Chr06: 29525174-29533636 Eucalyptus grandis
Eucgr.A00492 5.0kb downstream 5.0kb downstream 5000 false Chr06: 29528637-29533636 Eucalyptus grandis
Eucgr.A00492 10.0kb upstream 10.0kb upstream 13463 true Chr06: 29515174-29528636 Eucalyptus grandis
Eucgr.A00492 10.0kb upstream 10.0kb upstream 10000 false Chr06: 29515174-29525173 Eucalyptus grandis
Eucgr.A00492 10.0kb downstream 10.0kb downstream 13463 true Chr06: 29525174-29538636 Eucalyptus grandis
Eucgr.A00492 10.0kb downstream 10.0kb downstream 10000 false Chr06: 29528637-29538636 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124061386 5270 Rosid View MSA
123744780 5271 Pentapetalae View MSA
122793976 5272 Eudicot View MSA
122051007 5273 Angiosperm View MSA
121350494 5274 Embryophyte View MSA
123427737 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.8414 0.0 36.34   High
cufflinks 6.86676 0.0 17.3038    
cufflinks 9.72649 0.0 23.1946    
cufflinks 1.74506 0.0 5.37428   Low
cufflinks 9.11558 0.0 21.8819    
cufflinks 5.71342 0.0 14.8687    

0 Strain