Gene : Eucgr.F00420 E. grandis v2.0
Defline:  (1 of 5) PTHR11945:SF179 - MADS-BOX PROTEIN SVP Genomic Order:  292
Name:  ? Eucgr.F00420 Secondary Identifier:  ? PAC:32056598
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F00420 0.5kb upstream 0.5kb upstream 11113 true Chr06: 4625900-4637012 Eucalyptus grandis
Eucgr.F00420 0.5kb upstream 0.5kb upstream 500 false Chr06: 4636513-4637012 Eucalyptus grandis
Eucgr.F00420 0.5kb downstream 0.5kb downstream 11113 true Chr06: 4625400-4636512 Eucalyptus grandis
Eucgr.F00420 0.5kb downstream 0.5kb downstream 500 false Chr06: 4625400-4625899 Eucalyptus grandis
Eucgr.F00420 1.0kb upstream 1.0kb upstream 11613 true Chr06: 4625900-4637512 Eucalyptus grandis
Eucgr.F00420 1.0kb upstream 1.0kb upstream 1000 false Chr06: 4636513-4637512 Eucalyptus grandis
Eucgr.F00420 1.0kb downstream 1.0kb downstream 11613 true Chr06: 4624900-4636512 Eucalyptus grandis
Eucgr.F00420 1.0kb downstream 1.0kb downstream 1000 false Chr06: 4624900-4625899 Eucalyptus grandis
Eucgr.F00420 2.0kb upstream 2.0kb upstream 12613 true Chr06: 4625900-4638512 Eucalyptus grandis
Eucgr.F00420 2.0kb upstream 2.0kb upstream 2000 false Chr06: 4636513-4638512 Eucalyptus grandis
Eucgr.F00420 2.0kb downstream 2.0kb downstream 12613 true Chr06: 4623900-4636512 Eucalyptus grandis
Eucgr.F00420 2.0kb downstream 2.0kb downstream 2000 false Chr06: 4623900-4625899 Eucalyptus grandis
Eucgr.F00420 5.0kb upstream 5.0kb upstream 15613 true Chr06: 4625900-4641512 Eucalyptus grandis
Eucgr.F00420 5.0kb upstream 5.0kb upstream 5000 false Chr06: 4636513-4641512 Eucalyptus grandis
Eucgr.F00420 5.0kb downstream 5.0kb downstream 15613 true Chr06: 4620900-4636512 Eucalyptus grandis
Eucgr.F00420 5.0kb downstream 5.0kb downstream 5000 false Chr06: 4620900-4625899 Eucalyptus grandis
Eucgr.F00420 10.0kb upstream 10.0kb upstream 20613 true Chr06: 4625900-4646512 Eucalyptus grandis
Eucgr.F00420 10.0kb upstream 10.0kb upstream 10000 false Chr06: 4636513-4646512 Eucalyptus grandis
Eucgr.F00420 10.0kb downstream 10.0kb downstream 20613 true Chr06: 4615900-4636512 Eucalyptus grandis
Eucgr.F00420 10.0kb downstream 10.0kb downstream 10000 false Chr06: 4615900-4625899 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124071999 5270 Rosid View MSA
123753664 5271 Pentapetalae View MSA
122797561 5272 Eudicot View MSA
122050867 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 52.4457 0.0 128.072 High  
cufflinks 38.309 0.0 92.998   Low
cufflinks 59.5323 0.0 145.446 High  
cufflinks 42.7581 0.0 102.103 High  
cufflinks 82.448 0.0 205.316 High High
cufflinks 55.152 0.0 133.544 High  

0 Strain