Gene : Eucgr.F00397 E. grandis v2.0
Defline:  (1 of 1) 6.3.2.6 - Phosphoribosylaminoimidazolesuccinocarboxamide synthase / SAICARs Genomic Order:  314
Name:  ? Eucgr.F00397 Secondary Identifier:  ? PAC:32056580
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-6124 Eucalyptus grandis pathologic  
Egrandis PWY-841 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F00397 0.5kb upstream 0.5kb upstream 4698 true Chr06: 4848308-4853005 Eucalyptus grandis
Eucgr.F00397 0.5kb upstream 0.5kb upstream 500 false Chr06: 4848308-4848807 Eucalyptus grandis
Eucgr.F00397 0.5kb downstream 0.5kb downstream 4698 true Chr06: 4848808-4853505 Eucalyptus grandis
Eucgr.F00397 0.5kb downstream 0.5kb downstream 500 false Chr06: 4853006-4853505 Eucalyptus grandis
Eucgr.F00397 1.0kb upstream 1.0kb upstream 5198 true Chr06: 4847808-4853005 Eucalyptus grandis
Eucgr.F00397 1.0kb upstream 1.0kb upstream 1000 false Chr06: 4847808-4848807 Eucalyptus grandis
Eucgr.F00397 1.0kb downstream 1.0kb downstream 5198 true Chr06: 4848808-4854005 Eucalyptus grandis
Eucgr.F00397 1.0kb downstream 1.0kb downstream 1000 false Chr06: 4853006-4854005 Eucalyptus grandis
Eucgr.F00397 2.0kb upstream 2.0kb upstream 6198 true Chr06: 4846808-4853005 Eucalyptus grandis
Eucgr.F00397 2.0kb upstream 2.0kb upstream 2000 false Chr06: 4846808-4848807 Eucalyptus grandis
Eucgr.F00397 2.0kb downstream 2.0kb downstream 6198 true Chr06: 4848808-4855005 Eucalyptus grandis
Eucgr.F00397 2.0kb downstream 2.0kb downstream 2000 false Chr06: 4853006-4855005 Eucalyptus grandis
Eucgr.F00397 5.0kb upstream 5.0kb upstream 9198 true Chr06: 4843808-4853005 Eucalyptus grandis
Eucgr.F00397 5.0kb upstream 5.0kb upstream 5000 false Chr06: 4843808-4848807 Eucalyptus grandis
Eucgr.F00397 5.0kb downstream 5.0kb downstream 9198 true Chr06: 4848808-4858005 Eucalyptus grandis
Eucgr.F00397 5.0kb downstream 5.0kb downstream 5000 false Chr06: 4853006-4858005 Eucalyptus grandis
Eucgr.F00397 10.0kb upstream 10.0kb upstream 14198 true Chr06: 4838808-4853005 Eucalyptus grandis
Eucgr.F00397 10.0kb upstream 10.0kb upstream 10000 false Chr06: 4838808-4848807 Eucalyptus grandis
Eucgr.F00397 10.0kb downstream 10.0kb downstream 14198 true Chr06: 4848808-4863005 Eucalyptus grandis
Eucgr.F00397 10.0kb downstream 10.0kb downstream 10000 false Chr06: 4853006-4863005 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124065715 5270 Rosid View MSA
123739359 5271 Pentapetalae View MSA
122791298 5272 Eudicot View MSA
122044442 5273 Angiosperm View MSA
121346335 5274 Embryophyte View MSA
123424061 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.24534 0.0 22.288    
cufflinks 2.88 0.0 7.74632   Low
cufflinks 7.13309 0.0 17.5821    
cufflinks 4.21401 0.0 10.9108    
cufflinks 6.18881 0.0 15.5009    
cufflinks 9.15464 0.0 22.2071    

0 Strain