Gene : Eucgr.F00334 E. grandis v2.0
Defline:  (1 of 1) PTHR10108:SF899 - PECTIN METHYLTRANSFERASE QUA2-RELATED Genomic Order:  368
Name:  ? Eucgr.F00334 Secondary Identifier:  ? PAC:32053969
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F00334 0.5kb upstream 0.5kb upstream 7889 true Chr06: 5408143-5416031 Eucalyptus grandis
Eucgr.F00334 0.5kb upstream 0.5kb upstream 500 false Chr06: 5408143-5408642 Eucalyptus grandis
Eucgr.F00334 0.5kb downstream 0.5kb downstream 7889 true Chr06: 5408643-5416531 Eucalyptus grandis
Eucgr.F00334 0.5kb downstream 0.5kb downstream 500 false Chr06: 5416032-5416531 Eucalyptus grandis
Eucgr.F00334 1.0kb upstream 1.0kb upstream 8389 true Chr06: 5407643-5416031 Eucalyptus grandis
Eucgr.F00334 1.0kb upstream 1.0kb upstream 1000 false Chr06: 5407643-5408642 Eucalyptus grandis
Eucgr.F00334 1.0kb downstream 1.0kb downstream 8389 true Chr06: 5408643-5417031 Eucalyptus grandis
Eucgr.F00334 1.0kb downstream 1.0kb downstream 1000 false Chr06: 5416032-5417031 Eucalyptus grandis
Eucgr.F00334 2.0kb upstream 2.0kb upstream 9389 true Chr06: 5406643-5416031 Eucalyptus grandis
Eucgr.F00334 2.0kb upstream 2.0kb upstream 2000 false Chr06: 5406643-5408642 Eucalyptus grandis
Eucgr.F00334 2.0kb downstream 2.0kb downstream 9389 true Chr06: 5408643-5418031 Eucalyptus grandis
Eucgr.F00334 2.0kb downstream 2.0kb downstream 2000 false Chr06: 5416032-5418031 Eucalyptus grandis
Eucgr.F00334 5.0kb upstream 5.0kb upstream 12389 true Chr06: 5403643-5416031 Eucalyptus grandis
Eucgr.F00334 5.0kb upstream 5.0kb upstream 5000 false Chr06: 5403643-5408642 Eucalyptus grandis
Eucgr.F00334 5.0kb downstream 5.0kb downstream 12389 true Chr06: 5408643-5421031 Eucalyptus grandis
Eucgr.F00334 5.0kb downstream 5.0kb downstream 5000 false Chr06: 5416032-5421031 Eucalyptus grandis
Eucgr.F00334 10.0kb upstream 10.0kb upstream 17389 true Chr06: 5398643-5416031 Eucalyptus grandis
Eucgr.F00334 10.0kb upstream 10.0kb upstream 10000 false Chr06: 5398643-5408642 Eucalyptus grandis
Eucgr.F00334 10.0kb downstream 10.0kb downstream 17389 true Chr06: 5408643-5426031 Eucalyptus grandis
Eucgr.F00334 10.0kb downstream 10.0kb downstream 10000 false Chr06: 5416032-5426031 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068394 5270 Rosid View MSA
123753010 5271 Pentapetalae View MSA
122796119 5272 Eudicot View MSA
122048389 5273 Angiosperm View MSA
121346192 5274 Embryophyte View MSA
123380346 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.1334 0.0 34.0645   Low
cufflinks 76.4648 0.0 186.318 High  
cufflinks 15.533 0.0 34.8223   Low
cufflinks 206.711 0.0 645.356 High High
cufflinks 147.412 0.0 407.802 High  
cufflinks 30.3257 0.0 68.984    

0 Strain