Gene : Eucgr.F00123 E. grandis v2.0
Defline:  (1 of 3) PF09177 - Syntaxin 6, N-terminal (Syntaxin-6_N) Genomic Order:  196
Name:  ? Eucgr.F00123 Secondary Identifier:  ? PAC:32056241
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F00123 0.5kb upstream 0.5kb upstream 5788 true Chr06: 3507526-3513313 Eucalyptus grandis
Eucgr.F00123 0.5kb upstream 0.5kb upstream 500 false Chr06: 3512814-3513313 Eucalyptus grandis
Eucgr.F00123 0.5kb downstream 0.5kb downstream 5788 true Chr06: 3507026-3512813 Eucalyptus grandis
Eucgr.F00123 0.5kb downstream 0.5kb downstream 500 false Chr06: 3507026-3507525 Eucalyptus grandis
Eucgr.F00123 1.0kb upstream 1.0kb upstream 6288 true Chr06: 3507526-3513813 Eucalyptus grandis
Eucgr.F00123 1.0kb upstream 1.0kb upstream 1000 false Chr06: 3512814-3513813 Eucalyptus grandis
Eucgr.F00123 1.0kb downstream 1.0kb downstream 6288 true Chr06: 3506526-3512813 Eucalyptus grandis
Eucgr.F00123 1.0kb downstream 1.0kb downstream 1000 false Chr06: 3506526-3507525 Eucalyptus grandis
Eucgr.F00123 2.0kb upstream 2.0kb upstream 7288 true Chr06: 3507526-3514813 Eucalyptus grandis
Eucgr.F00123 2.0kb upstream 2.0kb upstream 2000 false Chr06: 3512814-3514813 Eucalyptus grandis
Eucgr.F00123 2.0kb downstream 2.0kb downstream 7288 true Chr06: 3505526-3512813 Eucalyptus grandis
Eucgr.F00123 2.0kb downstream 2.0kb downstream 2000 false Chr06: 3505526-3507525 Eucalyptus grandis
Eucgr.F00123 5.0kb upstream 5.0kb upstream 10288 true Chr06: 3507526-3517813 Eucalyptus grandis
Eucgr.F00123 5.0kb upstream 5.0kb upstream 5000 false Chr06: 3512814-3517813 Eucalyptus grandis
Eucgr.F00123 5.0kb downstream 5.0kb downstream 10288 true Chr06: 3502526-3512813 Eucalyptus grandis
Eucgr.F00123 5.0kb downstream 5.0kb downstream 5000 false Chr06: 3502526-3507525 Eucalyptus grandis
Eucgr.F00123 10.0kb upstream 10.0kb upstream 15288 true Chr06: 3507526-3522813 Eucalyptus grandis
Eucgr.F00123 10.0kb upstream 10.0kb upstream 10000 false Chr06: 3512814-3522813 Eucalyptus grandis
Eucgr.F00123 10.0kb downstream 10.0kb downstream 15288 true Chr06: 3497526-3512813 Eucalyptus grandis
Eucgr.F00123 10.0kb downstream 10.0kb downstream 10000 false Chr06: 3497526-3507525 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124064346 5270 Rosid View MSA
123743910 5271 Pentapetalae View MSA
122788324 5272 Eudicot View MSA
122042907 5273 Angiosperm View MSA
121348883 5274 Embryophyte View MSA
123381058 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.7353 0.0 83.9362 High  
cufflinks 48.6595 0.0 115.706 High  
cufflinks 39.2146 0.0 99.0602 High  
cufflinks 31.1037 0.0 77.3764    
cufflinks 63.9157 0.0 146.152 High High
cufflinks 14.7303 0.0 33.3078   Low

0 Strain