Gene : Eucgr.F00142 E. grandis v2.0
Defline:  (1 of 2) PTHR12183:SF14 - RING-FINGER DOMAIN-CONTAINING PROTEIN Genomic Order:  179
Name:  ? Eucgr.F00142 Secondary Identifier:  ? PAC:32053863
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F00142 0.5kb upstream 0.5kb upstream 3179 true Chr06: 3414660-3417838 Eucalyptus grandis
Eucgr.F00142 0.5kb upstream 0.5kb upstream 500 false Chr06: 3414660-3415159 Eucalyptus grandis
Eucgr.F00142 0.5kb downstream 0.5kb downstream 3179 true Chr06: 3415160-3418338 Eucalyptus grandis
Eucgr.F00142 0.5kb downstream 0.5kb downstream 500 false Chr06: 3417839-3418338 Eucalyptus grandis
Eucgr.F00142 1.0kb upstream 1.0kb upstream 3679 true Chr06: 3414160-3417838 Eucalyptus grandis
Eucgr.F00142 1.0kb upstream 1.0kb upstream 1000 false Chr06: 3414160-3415159 Eucalyptus grandis
Eucgr.F00142 1.0kb downstream 1.0kb downstream 3679 true Chr06: 3415160-3418838 Eucalyptus grandis
Eucgr.F00142 1.0kb downstream 1.0kb downstream 1000 false Chr06: 3417839-3418838 Eucalyptus grandis
Eucgr.F00142 2.0kb upstream 2.0kb upstream 4679 true Chr06: 3413160-3417838 Eucalyptus grandis
Eucgr.F00142 2.0kb upstream 2.0kb upstream 2000 false Chr06: 3413160-3415159 Eucalyptus grandis
Eucgr.F00142 2.0kb downstream 2.0kb downstream 4679 true Chr06: 3415160-3419838 Eucalyptus grandis
Eucgr.F00142 2.0kb downstream 2.0kb downstream 2000 false Chr06: 3417839-3419838 Eucalyptus grandis
Eucgr.F00142 5.0kb upstream 5.0kb upstream 7679 true Chr06: 3410160-3417838 Eucalyptus grandis
Eucgr.F00142 5.0kb upstream 5.0kb upstream 5000 false Chr06: 3410160-3415159 Eucalyptus grandis
Eucgr.F00142 5.0kb downstream 5.0kb downstream 7679 true Chr06: 3415160-3422838 Eucalyptus grandis
Eucgr.F00142 5.0kb downstream 5.0kb downstream 5000 false Chr06: 3417839-3422838 Eucalyptus grandis
Eucgr.F00142 10.0kb upstream 10.0kb upstream 12679 true Chr06: 3405160-3417838 Eucalyptus grandis
Eucgr.F00142 10.0kb upstream 10.0kb upstream 10000 false Chr06: 3405160-3415159 Eucalyptus grandis
Eucgr.F00142 10.0kb downstream 10.0kb downstream 12679 true Chr06: 3415160-3427838 Eucalyptus grandis
Eucgr.F00142 10.0kb downstream 10.0kb downstream 10000 false Chr06: 3417839-3427838 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124071043 5270 Rosid View MSA
123646755 5271 Pentapetalae View MSA
122796060 5272 Eudicot View MSA
122049703 5273 Angiosperm View MSA
121349312 5274 Embryophyte View MSA
123381271 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.4728 0.0 31.1949   High
cufflinks 3.74206 0.0 9.68122    
cufflinks 11.251 0.0 26.885    
cufflinks 2.12973 0.0 5.96836    
cufflinks 1.2529 0.0 3.8085   Low
cufflinks 10.1555 0.0 23.338    

0 Strain