Gene : Eucgr.F00038 E. grandis v2.0
Defline:  (1 of 2) PTHR12383:SF15 - THYLAKOIDAL PROCESSING PEPTIDASE 1, CHLOROPLASTIC-RELATED Genomic Order:  5
Name:  ? Eucgr.F00038 Secondary Identifier:  ? PAC:32054706
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F00038 0.5kb upstream 0.5kb upstream 3613 true Chr06: 73159-76771 Eucalyptus grandis
Eucgr.F00038 0.5kb upstream 0.5kb upstream 500 false Chr06: 73159-73658 Eucalyptus grandis
Eucgr.F00038 0.5kb downstream 0.5kb downstream 3613 true Chr06: 73659-77271 Eucalyptus grandis
Eucgr.F00038 0.5kb downstream 0.5kb downstream 500 false Chr06: 76772-77271 Eucalyptus grandis
Eucgr.F00038 1.0kb upstream 1.0kb upstream 4113 true Chr06: 72659-76771 Eucalyptus grandis
Eucgr.F00038 1.0kb upstream 1.0kb upstream 1000 false Chr06: 72659-73658 Eucalyptus grandis
Eucgr.F00038 1.0kb downstream 1.0kb downstream 4113 true Chr06: 73659-77771 Eucalyptus grandis
Eucgr.F00038 1.0kb downstream 1.0kb downstream 1000 false Chr06: 76772-77771 Eucalyptus grandis
Eucgr.F00038 2.0kb upstream 2.0kb upstream 5113 true Chr06: 71659-76771 Eucalyptus grandis
Eucgr.F00038 2.0kb upstream 2.0kb upstream 2000 false Chr06: 71659-73658 Eucalyptus grandis
Eucgr.F00038 2.0kb downstream 2.0kb downstream 5113 true Chr06: 73659-78771 Eucalyptus grandis
Eucgr.F00038 2.0kb downstream 2.0kb downstream 2000 false Chr06: 76772-78771 Eucalyptus grandis
Eucgr.F00038 5.0kb upstream 5.0kb upstream 8113 true Chr06: 68659-76771 Eucalyptus grandis
Eucgr.F00038 5.0kb upstream 5.0kb upstream 5000 false Chr06: 68659-73658 Eucalyptus grandis
Eucgr.F00038 5.0kb downstream 5.0kb downstream 8113 true Chr06: 73659-81771 Eucalyptus grandis
Eucgr.F00038 5.0kb downstream 5.0kb downstream 5000 false Chr06: 76772-81771 Eucalyptus grandis
Eucgr.F00038 10.0kb upstream 10.0kb upstream 13113 true Chr06: 63659-76771 Eucalyptus grandis
Eucgr.F00038 10.0kb upstream 10.0kb upstream 10000 false Chr06: 63659-73658 Eucalyptus grandis
Eucgr.F00038 10.0kb downstream 10.0kb downstream 13113 true Chr06: 73659-86771 Eucalyptus grandis
Eucgr.F00038 10.0kb downstream 10.0kb downstream 10000 false Chr06: 76772-86771 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124066317 5270 Rosid View MSA
123747244 5271 Pentapetalae View MSA
122789106 5272 Eudicot View MSA
122046589 5273 Angiosperm View MSA
123428894 5275 Viridiplantae View MSA
121348818 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.8182 0.0 57.122    
cufflinks 36.6239 0.0 81.1084    
cufflinks 26.9727 0.0 59.6695 High  
cufflinks 36.6627 0.0 81.1902    
cufflinks 17.366 0.0 38.7464   Low
cufflinks 39.521 0.0 87.6648 High  

0 Strain