Gene : Eucgr.F00494 E. grandis v2.0
Defline:  (1 of 2) PTHR22847//PTHR22847:SF453 - WD40 REPEAT PROTEIN Genomic Order:  448
Name:  ? Eucgr.F00494 Secondary Identifier:  ? PAC:32057419
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F00494 0.5kb upstream 0.5kb upstream 6351 true Chr06: 6678661-6685011 Eucalyptus grandis
Eucgr.F00494 0.5kb upstream 0.5kb upstream 500 false Chr06: 6684512-6685011 Eucalyptus grandis
Eucgr.F00494 0.5kb downstream 0.5kb downstream 6351 true Chr06: 6678161-6684511 Eucalyptus grandis
Eucgr.F00494 0.5kb downstream 0.5kb downstream 500 false Chr06: 6678161-6678660 Eucalyptus grandis
Eucgr.F00494 1.0kb upstream 1.0kb upstream 6851 true Chr06: 6678661-6685511 Eucalyptus grandis
Eucgr.F00494 1.0kb upstream 1.0kb upstream 1000 false Chr06: 6684512-6685511 Eucalyptus grandis
Eucgr.F00494 1.0kb downstream 1.0kb downstream 6851 true Chr06: 6677661-6684511 Eucalyptus grandis
Eucgr.F00494 1.0kb downstream 1.0kb downstream 1000 false Chr06: 6677661-6678660 Eucalyptus grandis
Eucgr.F00494 2.0kb upstream 2.0kb upstream 7851 true Chr06: 6678661-6686511 Eucalyptus grandis
Eucgr.F00494 2.0kb upstream 2.0kb upstream 2000 false Chr06: 6684512-6686511 Eucalyptus grandis
Eucgr.F00494 2.0kb downstream 2.0kb downstream 7851 true Chr06: 6676661-6684511 Eucalyptus grandis
Eucgr.F00494 2.0kb downstream 2.0kb downstream 2000 false Chr06: 6676661-6678660 Eucalyptus grandis
Eucgr.F00494 5.0kb upstream 5.0kb upstream 10851 true Chr06: 6678661-6689511 Eucalyptus grandis
Eucgr.F00494 5.0kb upstream 5.0kb upstream 5000 false Chr06: 6684512-6689511 Eucalyptus grandis
Eucgr.F00494 5.0kb downstream 5.0kb downstream 10851 true Chr06: 6673661-6684511 Eucalyptus grandis
Eucgr.F00494 5.0kb downstream 5.0kb downstream 5000 false Chr06: 6673661-6678660 Eucalyptus grandis
Eucgr.F00494 10.0kb upstream 10.0kb upstream 15851 true Chr06: 6678661-6694511 Eucalyptus grandis
Eucgr.F00494 10.0kb upstream 10.0kb upstream 10000 false Chr06: 6684512-6694511 Eucalyptus grandis
Eucgr.F00494 10.0kb downstream 10.0kb downstream 15851 true Chr06: 6668661-6684511 Eucalyptus grandis
Eucgr.F00494 10.0kb downstream 10.0kb downstream 10000 false Chr06: 6668661-6678660 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124063136 5270 Rosid View MSA
123741665 5271 Pentapetalae View MSA
122789476 5272 Eudicot View MSA
122045317 5273 Angiosperm View MSA
121348063 5274 Embryophyte View MSA
123428605 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 103.456 0.0 385.285 High  
cufflinks 97.883 0.0 376.288 High  
cufflinks 94.7721 0.0 363.01 High  
cufflinks 75.9725 0.0 259.398 High Low
cufflinks 100.115 0.0 357.567 High  
cufflinks 184.388 0.0 666.139 High High

0 Strain