Gene : Eucgr.F01458 E. grandis v2.0
Defline:  (1 of 11) KOG1100 - Predicted E3 ubiquitin ligase Genomic Order:  1240
Name:  ? Eucgr.F01458 Secondary Identifier:  ? PAC:32054650
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F01458 0.5kb upstream 0.5kb upstream 2247 true Chr06: 19722415-19724661 Eucalyptus grandis
Eucgr.F01458 0.5kb upstream 0.5kb upstream 500 false Chr06: 19722415-19722914 Eucalyptus grandis
Eucgr.F01458 0.5kb downstream 0.5kb downstream 2247 true Chr06: 19722915-19725161 Eucalyptus grandis
Eucgr.F01458 0.5kb downstream 0.5kb downstream 500 false Chr06: 19724662-19725161 Eucalyptus grandis
Eucgr.F01458 1.0kb upstream 1.0kb upstream 2747 true Chr06: 19721915-19724661 Eucalyptus grandis
Eucgr.F01458 1.0kb upstream 1.0kb upstream 1000 false Chr06: 19721915-19722914 Eucalyptus grandis
Eucgr.F01458 1.0kb downstream 1.0kb downstream 2747 true Chr06: 19722915-19725661 Eucalyptus grandis
Eucgr.F01458 1.0kb downstream 1.0kb downstream 1000 false Chr06: 19724662-19725661 Eucalyptus grandis
Eucgr.F01458 2.0kb upstream 2.0kb upstream 3747 true Chr06: 19720915-19724661 Eucalyptus grandis
Eucgr.F01458 2.0kb upstream 2.0kb upstream 2000 false Chr06: 19720915-19722914 Eucalyptus grandis
Eucgr.F01458 2.0kb downstream 2.0kb downstream 3747 true Chr06: 19722915-19726661 Eucalyptus grandis
Eucgr.F01458 2.0kb downstream 2.0kb downstream 2000 false Chr06: 19724662-19726661 Eucalyptus grandis
Eucgr.F01458 5.0kb upstream 5.0kb upstream 6747 true Chr06: 19717915-19724661 Eucalyptus grandis
Eucgr.F01458 5.0kb upstream 5.0kb upstream 5000 false Chr06: 19717915-19722914 Eucalyptus grandis
Eucgr.F01458 5.0kb downstream 5.0kb downstream 6747 true Chr06: 19722915-19729661 Eucalyptus grandis
Eucgr.F01458 5.0kb downstream 5.0kb downstream 5000 false Chr06: 19724662-19729661 Eucalyptus grandis
Eucgr.F01458 10.0kb upstream 10.0kb upstream 11747 true Chr06: 19712915-19724661 Eucalyptus grandis
Eucgr.F01458 10.0kb upstream 10.0kb upstream 10000 false Chr06: 19712915-19722914 Eucalyptus grandis
Eucgr.F01458 10.0kb downstream 10.0kb downstream 11747 true Chr06: 19722915-19734661 Eucalyptus grandis
Eucgr.F01458 10.0kb downstream 10.0kb downstream 10000 false Chr06: 19724662-19734661 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124065052 5270 Rosid View MSA
123752259 5271 Pentapetalae View MSA
122794971 5272 Eudicot View MSA
122050089 5273 Angiosperm View MSA
121348016 5274 Embryophyte View MSA
123380706 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.6346 0.0 29.0887   High
cufflinks 4.71429 0.0 11.9695   Low
cufflinks 10.1532 0.0 23.9203    
cufflinks 8.6911 0.0 20.7479    
cufflinks 5.9497 0.0 14.7128    
cufflinks 9.30228 0.0 21.827    

0 Strain