Gene : Eucgr.F01447 E. grandis v2.0
Defline:  (1 of 2) PTHR34369:SF2 - PHOTOSYSTEM II 10 KDA POLYPEPTIDE, CHLOROPLASTIC Genomic Order:  1230
Name:  ? Eucgr.F01447 Secondary Identifier:  ? PAC:32053408
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F01447 0.5kb upstream 0.5kb upstream 2663 true Chr06: 19623538-19626200 Eucalyptus grandis
Eucgr.F01447 0.5kb upstream 0.5kb upstream 500 false Chr06: 19623538-19624037 Eucalyptus grandis
Eucgr.F01447 0.5kb downstream 0.5kb downstream 2663 true Chr06: 19624038-19626700 Eucalyptus grandis
Eucgr.F01447 0.5kb downstream 0.5kb downstream 500 false Chr06: 19626201-19626700 Eucalyptus grandis
Eucgr.F01447 1.0kb upstream 1.0kb upstream 3163 true Chr06: 19623038-19626200 Eucalyptus grandis
Eucgr.F01447 1.0kb upstream 1.0kb upstream 1000 false Chr06: 19623038-19624037 Eucalyptus grandis
Eucgr.F01447 1.0kb downstream 1.0kb downstream 3163 true Chr06: 19624038-19627200 Eucalyptus grandis
Eucgr.F01447 1.0kb downstream 1.0kb downstream 1000 false Chr06: 19626201-19627200 Eucalyptus grandis
Eucgr.F01447 2.0kb upstream 2.0kb upstream 4163 true Chr06: 19622038-19626200 Eucalyptus grandis
Eucgr.F01447 2.0kb upstream 2.0kb upstream 2000 false Chr06: 19622038-19624037 Eucalyptus grandis
Eucgr.F01447 2.0kb downstream 2.0kb downstream 4163 true Chr06: 19624038-19628200 Eucalyptus grandis
Eucgr.F01447 2.0kb downstream 2.0kb downstream 2000 false Chr06: 19626201-19628200 Eucalyptus grandis
Eucgr.F01447 5.0kb upstream 5.0kb upstream 7163 true Chr06: 19619038-19626200 Eucalyptus grandis
Eucgr.F01447 5.0kb upstream 5.0kb upstream 5000 false Chr06: 19619038-19624037 Eucalyptus grandis
Eucgr.F01447 5.0kb downstream 5.0kb downstream 7163 true Chr06: 19624038-19631200 Eucalyptus grandis
Eucgr.F01447 5.0kb downstream 5.0kb downstream 5000 false Chr06: 19626201-19631200 Eucalyptus grandis
Eucgr.F01447 10.0kb upstream 10.0kb upstream 12163 true Chr06: 19614038-19626200 Eucalyptus grandis
Eucgr.F01447 10.0kb upstream 10.0kb upstream 10000 false Chr06: 19614038-19624037 Eucalyptus grandis
Eucgr.F01447 10.0kb downstream 10.0kb downstream 12163 true Chr06: 19624038-19636200 Eucalyptus grandis
Eucgr.F01447 10.0kb downstream 10.0kb downstream 10000 false Chr06: 19626201-19636200 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124063437 5270 Rosid View MSA
123736551 5271 Pentapetalae View MSA
122791395 5272 Eudicot View MSA
122042523 5273 Angiosperm View MSA
121350947 5274 Embryophyte View MSA
123427183 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.6024 0.0 81.3352 High Low
cufflinks 70.2571 0.0 158.182 High High
cufflinks 45.5612 0.0 103.438 High  
cufflinks 34.2209 0.0 79.4464    
cufflinks 47.8267 0.0 124.957 High  
cufflinks 73.7293 0.0 166.123 High High

0 Strain