Gene : Eucgr.F01378 E. grandis v2.0
Defline:  (1 of 1) PTHR28039:SF6 - ALTERED INHERITANCE OF MITOCHONDRIA PROTEIN 18, MITOCHONDRIAL-RELATED Genomic Order:  1173
Name:  ? Eucgr.F01378 Secondary Identifier:  ? PAC:32052912
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY1F-FLAVSYN Eucalyptus grandis pathologic  
Egrandis PWY-5059 Eucalyptus grandis pathologic  
Egrandis PWY-6787 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F01378 0.5kb upstream 0.5kb upstream 2864 true Chr06: 18856688-18859551 Eucalyptus grandis
Eucgr.F01378 0.5kb upstream 0.5kb upstream 500 false Chr06: 18859052-18859551 Eucalyptus grandis
Eucgr.F01378 0.5kb downstream 0.5kb downstream 2864 true Chr06: 18856188-18859051 Eucalyptus grandis
Eucgr.F01378 0.5kb downstream 0.5kb downstream 500 false Chr06: 18856188-18856687 Eucalyptus grandis
Eucgr.F01378 1.0kb upstream 1.0kb upstream 3364 true Chr06: 18856688-18860051 Eucalyptus grandis
Eucgr.F01378 1.0kb upstream 1.0kb upstream 1000 false Chr06: 18859052-18860051 Eucalyptus grandis
Eucgr.F01378 1.0kb downstream 1.0kb downstream 3364 true Chr06: 18855688-18859051 Eucalyptus grandis
Eucgr.F01378 1.0kb downstream 1.0kb downstream 1000 false Chr06: 18855688-18856687 Eucalyptus grandis
Eucgr.F01378 2.0kb upstream 2.0kb upstream 4364 true Chr06: 18856688-18861051 Eucalyptus grandis
Eucgr.F01378 2.0kb upstream 2.0kb upstream 2000 false Chr06: 18859052-18861051 Eucalyptus grandis
Eucgr.F01378 2.0kb downstream 2.0kb downstream 4364 true Chr06: 18854688-18859051 Eucalyptus grandis
Eucgr.F01378 2.0kb downstream 2.0kb downstream 2000 false Chr06: 18854688-18856687 Eucalyptus grandis
Eucgr.F01378 5.0kb upstream 5.0kb upstream 7364 true Chr06: 18856688-18864051 Eucalyptus grandis
Eucgr.F01378 5.0kb upstream 5.0kb upstream 5000 false Chr06: 18859052-18864051 Eucalyptus grandis
Eucgr.F01378 5.0kb downstream 5.0kb downstream 7364 true Chr06: 18851688-18859051 Eucalyptus grandis
Eucgr.F01378 5.0kb downstream 5.0kb downstream 5000 false Chr06: 18851688-18856687 Eucalyptus grandis
Eucgr.F01378 10.0kb upstream 10.0kb upstream 12364 true Chr06: 18856688-18869051 Eucalyptus grandis
Eucgr.F01378 10.0kb upstream 10.0kb upstream 10000 false Chr06: 18859052-18869051 Eucalyptus grandis
Eucgr.F01378 10.0kb downstream 10.0kb downstream 12364 true Chr06: 18846688-18859051 Eucalyptus grandis
Eucgr.F01378 10.0kb downstream 10.0kb downstream 10000 false Chr06: 18846688-18856687 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124063090 5270 Rosid View MSA
123738535 5271 Pentapetalae View MSA
122786732 5272 Eudicot View MSA
122050313 5273 Angiosperm View MSA
121351129 5274 Embryophyte View MSA
123427502 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.0507 0.0 49.4545    
cufflinks 2.15265 0.0 6.7002   Low
cufflinks 22.4675 0.0 71.5782    
cufflinks 5.86205 0.0 16.5196    
cufflinks 13.3428 0.0 35.7132    
cufflinks 29.2609 0.0 81.5706    

0 Strain