Gene : Eucgr.F01175 E. grandis v2.0
Defline:  (1 of 1) PTHR21330:SF2 - E3 SUMO-PROTEIN LIGASE MMS21 Genomic Order:  1028
Name:  ? Eucgr.F01175 Secondary Identifier:  ? PAC:32052851
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F01175 0.5kb upstream 0.5kb upstream 3645 true Chr06: 15939197-15942841 Eucalyptus grandis
Eucgr.F01175 0.5kb upstream 0.5kb upstream 500 false Chr06: 15939197-15939696 Eucalyptus grandis
Eucgr.F01175 0.5kb downstream 0.5kb downstream 3645 true Chr06: 15939697-15943341 Eucalyptus grandis
Eucgr.F01175 0.5kb downstream 0.5kb downstream 500 false Chr06: 15942842-15943341 Eucalyptus grandis
Eucgr.F01175 1.0kb upstream 1.0kb upstream 4145 true Chr06: 15938697-15942841 Eucalyptus grandis
Eucgr.F01175 1.0kb upstream 1.0kb upstream 1000 false Chr06: 15938697-15939696 Eucalyptus grandis
Eucgr.F01175 1.0kb downstream 1.0kb downstream 4145 true Chr06: 15939697-15943841 Eucalyptus grandis
Eucgr.F01175 1.0kb downstream 1.0kb downstream 1000 false Chr06: 15942842-15943841 Eucalyptus grandis
Eucgr.F01175 2.0kb upstream 2.0kb upstream 5145 true Chr06: 15937697-15942841 Eucalyptus grandis
Eucgr.F01175 2.0kb upstream 2.0kb upstream 2000 false Chr06: 15937697-15939696 Eucalyptus grandis
Eucgr.F01175 2.0kb downstream 2.0kb downstream 5145 true Chr06: 15939697-15944841 Eucalyptus grandis
Eucgr.F01175 2.0kb downstream 2.0kb downstream 2000 false Chr06: 15942842-15944841 Eucalyptus grandis
Eucgr.F01175 5.0kb upstream 5.0kb upstream 8145 true Chr06: 15934697-15942841 Eucalyptus grandis
Eucgr.F01175 5.0kb upstream 5.0kb upstream 5000 false Chr06: 15934697-15939696 Eucalyptus grandis
Eucgr.F01175 5.0kb downstream 5.0kb downstream 8145 true Chr06: 15939697-15947841 Eucalyptus grandis
Eucgr.F01175 5.0kb downstream 5.0kb downstream 5000 false Chr06: 15942842-15947841 Eucalyptus grandis
Eucgr.F01175 10.0kb upstream 10.0kb upstream 13145 true Chr06: 15929697-15942841 Eucalyptus grandis
Eucgr.F01175 10.0kb upstream 10.0kb upstream 10000 false Chr06: 15929697-15939696 Eucalyptus grandis
Eucgr.F01175 10.0kb downstream 10.0kb downstream 13145 true Chr06: 15939697-15952841 Eucalyptus grandis
Eucgr.F01175 10.0kb downstream 10.0kb downstream 10000 false Chr06: 15942842-15952841 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124064105 5270 Rosid View MSA
123740450 5271 Pentapetalae View MSA
122790710 5272 Eudicot View MSA
122044966 5273 Angiosperm View MSA
121344157 5274 Embryophyte View MSA
123424394 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.5777 0.0 7.04553    
cufflinks 4.6646 0.0 11.9851   High
cufflinks 0.857214 0.0 2.63482   Low
cufflinks 2.15656 0.0 5.97686    
cufflinks 3.6805 0.0 9.69918    
cufflinks 2.47744 0.0 6.80725    

0 Strain