Gene : Eucgr.F01602 E. grandis v2.0
Defline:  (1 of 1) PTHR21091:SF18 - RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I Genomic Order:  1375
Name:  ? Eucgr.F01602 Secondary Identifier:  ? PAC:32054607
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F01602 0.5kb upstream 0.5kb upstream 4761 true Chr06: 21234380-21239140 Eucalyptus grandis
Eucgr.F01602 0.5kb upstream 0.5kb upstream 500 false Chr06: 21234380-21234879 Eucalyptus grandis
Eucgr.F01602 0.5kb downstream 0.5kb downstream 4761 true Chr06: 21234880-21239640 Eucalyptus grandis
Eucgr.F01602 0.5kb downstream 0.5kb downstream 500 false Chr06: 21239141-21239640 Eucalyptus grandis
Eucgr.F01602 1.0kb upstream 1.0kb upstream 5261 true Chr06: 21233880-21239140 Eucalyptus grandis
Eucgr.F01602 1.0kb upstream 1.0kb upstream 1000 false Chr06: 21233880-21234879 Eucalyptus grandis
Eucgr.F01602 1.0kb downstream 1.0kb downstream 5261 true Chr06: 21234880-21240140 Eucalyptus grandis
Eucgr.F01602 1.0kb downstream 1.0kb downstream 1000 false Chr06: 21239141-21240140 Eucalyptus grandis
Eucgr.F01602 2.0kb upstream 2.0kb upstream 6261 true Chr06: 21232880-21239140 Eucalyptus grandis
Eucgr.F01602 2.0kb upstream 2.0kb upstream 2000 false Chr06: 21232880-21234879 Eucalyptus grandis
Eucgr.F01602 2.0kb downstream 2.0kb downstream 6261 true Chr06: 21234880-21241140 Eucalyptus grandis
Eucgr.F01602 2.0kb downstream 2.0kb downstream 2000 false Chr06: 21239141-21241140 Eucalyptus grandis
Eucgr.F01602 5.0kb upstream 5.0kb upstream 9261 true Chr06: 21229880-21239140 Eucalyptus grandis
Eucgr.F01602 5.0kb upstream 5.0kb upstream 5000 false Chr06: 21229880-21234879 Eucalyptus grandis
Eucgr.F01602 5.0kb downstream 5.0kb downstream 9261 true Chr06: 21234880-21244140 Eucalyptus grandis
Eucgr.F01602 5.0kb downstream 5.0kb downstream 5000 false Chr06: 21239141-21244140 Eucalyptus grandis
Eucgr.F01602 10.0kb upstream 10.0kb upstream 14261 true Chr06: 21224880-21239140 Eucalyptus grandis
Eucgr.F01602 10.0kb upstream 10.0kb upstream 10000 false Chr06: 21224880-21234879 Eucalyptus grandis
Eucgr.F01602 10.0kb downstream 10.0kb downstream 14261 true Chr06: 21234880-21249140 Eucalyptus grandis
Eucgr.F01602 10.0kb downstream 10.0kb downstream 10000 false Chr06: 21239141-21249140 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062180 5270 Rosid View MSA
123741052 5271 Pentapetalae View MSA
122786797 5272 Eudicot View MSA
122043278 5273 Angiosperm View MSA
121347213 5274 Embryophyte View MSA
123424563 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.72418 0.0 5.20197    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.04649 0.0 3.45482    
cufflinks 0.137068 0.0 0.771665 Low Low
cufflinks 1.28876 0.0 4.09134    
cufflinks 1.0007 0.0 3.45726    

0 Strain