Gene : Eucgr.F02385 E. grandis v2.0
Defline:  (1 of 2) PTHR12383:SF15 - THYLAKOIDAL PROCESSING PEPTIDASE 1, CHLOROPLASTIC-RELATED Genomic Order:  1827
Name:  ? Eucgr.F02385 Secondary Identifier:  ? PAC:32053661
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F02385 0.5kb upstream 0.5kb upstream 3167 true Chr06: 30743850-30747016 Eucalyptus grandis
Eucgr.F02385 0.5kb upstream 0.5kb upstream 500 false Chr06: 30743850-30744349 Eucalyptus grandis
Eucgr.F02385 0.5kb downstream 0.5kb downstream 3167 true Chr06: 30744350-30747516 Eucalyptus grandis
Eucgr.F02385 0.5kb downstream 0.5kb downstream 500 false Chr06: 30747017-30747516 Eucalyptus grandis
Eucgr.F02385 1.0kb upstream 1.0kb upstream 3667 true Chr06: 30743350-30747016 Eucalyptus grandis
Eucgr.F02385 1.0kb upstream 1.0kb upstream 1000 false Chr06: 30743350-30744349 Eucalyptus grandis
Eucgr.F02385 1.0kb downstream 1.0kb downstream 3667 true Chr06: 30744350-30748016 Eucalyptus grandis
Eucgr.F02385 1.0kb downstream 1.0kb downstream 1000 false Chr06: 30747017-30748016 Eucalyptus grandis
Eucgr.F02385 2.0kb upstream 2.0kb upstream 4667 true Chr06: 30742350-30747016 Eucalyptus grandis
Eucgr.F02385 2.0kb upstream 2.0kb upstream 2000 false Chr06: 30742350-30744349 Eucalyptus grandis
Eucgr.F02385 2.0kb downstream 2.0kb downstream 4667 true Chr06: 30744350-30749016 Eucalyptus grandis
Eucgr.F02385 2.0kb downstream 2.0kb downstream 2000 false Chr06: 30747017-30749016 Eucalyptus grandis
Eucgr.F02385 5.0kb upstream 5.0kb upstream 7667 true Chr06: 30739350-30747016 Eucalyptus grandis
Eucgr.F02385 5.0kb upstream 5.0kb upstream 5000 false Chr06: 30739350-30744349 Eucalyptus grandis
Eucgr.F02385 5.0kb downstream 5.0kb downstream 7667 true Chr06: 30744350-30752016 Eucalyptus grandis
Eucgr.F02385 5.0kb downstream 5.0kb downstream 5000 false Chr06: 30747017-30752016 Eucalyptus grandis
Eucgr.F02385 10.0kb upstream 10.0kb upstream 12667 true Chr06: 30734350-30747016 Eucalyptus grandis
Eucgr.F02385 10.0kb upstream 10.0kb upstream 10000 false Chr06: 30734350-30744349 Eucalyptus grandis
Eucgr.F02385 10.0kb downstream 10.0kb downstream 12667 true Chr06: 30744350-30757016 Eucalyptus grandis
Eucgr.F02385 10.0kb downstream 10.0kb downstream 10000 false Chr06: 30747017-30757016 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124066317 5270 Rosid View MSA
123747244 5271 Pentapetalae View MSA
122789106 5272 Eudicot View MSA
122046589 5273 Angiosperm View MSA
123428894 5275 Viridiplantae View MSA
121348818 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.47702 0.0 11.5254    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 3.9379 0.0 10.2667    
cufflinks 1.01497 0.0 3.03002   Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 2.29673 0.0 6.31071    

0 Strain