Gene : Eucgr.F02345 E. grandis v2.0
Defline:  (1 of 53) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1860
Name:  ? Eucgr.F02345 Secondary Identifier:  ? PAC:32054232
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F02345 0.5kb upstream 0.5kb upstream 3264 true Chr06: 31303551-31306814 Eucalyptus grandis
Eucgr.F02345 0.5kb upstream 0.5kb upstream 500 false Chr06: 31306315-31306814 Eucalyptus grandis
Eucgr.F02345 0.5kb downstream 0.5kb downstream 3264 true Chr06: 31303051-31306314 Eucalyptus grandis
Eucgr.F02345 0.5kb downstream 0.5kb downstream 500 false Chr06: 31303051-31303550 Eucalyptus grandis
Eucgr.F02345 1.0kb upstream 1.0kb upstream 3764 true Chr06: 31303551-31307314 Eucalyptus grandis
Eucgr.F02345 1.0kb upstream 1.0kb upstream 1000 false Chr06: 31306315-31307314 Eucalyptus grandis
Eucgr.F02345 1.0kb downstream 1.0kb downstream 3764 true Chr06: 31302551-31306314 Eucalyptus grandis
Eucgr.F02345 1.0kb downstream 1.0kb downstream 1000 false Chr06: 31302551-31303550 Eucalyptus grandis
Eucgr.F02345 2.0kb upstream 2.0kb upstream 4764 true Chr06: 31303551-31308314 Eucalyptus grandis
Eucgr.F02345 2.0kb upstream 2.0kb upstream 2000 false Chr06: 31306315-31308314 Eucalyptus grandis
Eucgr.F02345 2.0kb downstream 2.0kb downstream 4764 true Chr06: 31301551-31306314 Eucalyptus grandis
Eucgr.F02345 2.0kb downstream 2.0kb downstream 2000 false Chr06: 31301551-31303550 Eucalyptus grandis
Eucgr.F02345 5.0kb upstream 5.0kb upstream 7764 true Chr06: 31303551-31311314 Eucalyptus grandis
Eucgr.F02345 5.0kb upstream 5.0kb upstream 5000 false Chr06: 31306315-31311314 Eucalyptus grandis
Eucgr.F02345 5.0kb downstream 5.0kb downstream 7764 true Chr06: 31298551-31306314 Eucalyptus grandis
Eucgr.F02345 5.0kb downstream 5.0kb downstream 5000 false Chr06: 31298551-31303550 Eucalyptus grandis
Eucgr.F02345 10.0kb upstream 10.0kb upstream 12764 true Chr06: 31303551-31316314 Eucalyptus grandis
Eucgr.F02345 10.0kb upstream 10.0kb upstream 10000 false Chr06: 31306315-31316314 Eucalyptus grandis
Eucgr.F02345 10.0kb downstream 10.0kb downstream 12764 true Chr06: 31293551-31306314 Eucalyptus grandis
Eucgr.F02345 10.0kb downstream 10.0kb downstream 10000 false Chr06: 31293551-31303550 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124067388 5270 Rosid View MSA
123740629 5271 Pentapetalae View MSA
122786381 5272 Eudicot View MSA
122046453 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121310608 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.79915 0.0 9.03633    
cufflinks 2.95564 0.0 7.17542    
cufflinks 3.56606 0.0 8.50437    
cufflinks 3.07885 0.0 7.41854    
cufflinks 3.07168 0.0 7.43672    
cufflinks 4.7856 0.0 11.1823   High

0 Strain