Gene : Eucgr.F03000 E. grandis v2.0
Defline:  (1 of 1) 2.8.4.5 - tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase / Methylthio-threonylcarbamoyl-adenosine transferase B Genomic Order:  2656
Name:  ? Eucgr.F03000 Secondary Identifier:  ? PAC:32055843
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F03000 0.5kb upstream 0.5kb upstream 7767 true Chr06: 42119121-42126887 Eucalyptus grandis
Eucgr.F03000 0.5kb upstream 0.5kb upstream 500 false Chr06: 42126388-42126887 Eucalyptus grandis
Eucgr.F03000 0.5kb downstream 0.5kb downstream 7767 true Chr06: 42118621-42126387 Eucalyptus grandis
Eucgr.F03000 0.5kb downstream 0.5kb downstream 500 false Chr06: 42118621-42119120 Eucalyptus grandis
Eucgr.F03000 1.0kb upstream 1.0kb upstream 8267 true Chr06: 42119121-42127387 Eucalyptus grandis
Eucgr.F03000 1.0kb upstream 1.0kb upstream 1000 false Chr06: 42126388-42127387 Eucalyptus grandis
Eucgr.F03000 1.0kb downstream 1.0kb downstream 8267 true Chr06: 42118121-42126387 Eucalyptus grandis
Eucgr.F03000 1.0kb downstream 1.0kb downstream 1000 false Chr06: 42118121-42119120 Eucalyptus grandis
Eucgr.F03000 2.0kb upstream 2.0kb upstream 9267 true Chr06: 42119121-42128387 Eucalyptus grandis
Eucgr.F03000 2.0kb upstream 2.0kb upstream 2000 false Chr06: 42126388-42128387 Eucalyptus grandis
Eucgr.F03000 2.0kb downstream 2.0kb downstream 9267 true Chr06: 42117121-42126387 Eucalyptus grandis
Eucgr.F03000 2.0kb downstream 2.0kb downstream 2000 false Chr06: 42117121-42119120 Eucalyptus grandis
Eucgr.F03000 5.0kb upstream 5.0kb upstream 12267 true Chr06: 42119121-42131387 Eucalyptus grandis
Eucgr.F03000 5.0kb upstream 5.0kb upstream 5000 false Chr06: 42126388-42131387 Eucalyptus grandis
Eucgr.F03000 5.0kb downstream 5.0kb downstream 12267 true Chr06: 42114121-42126387 Eucalyptus grandis
Eucgr.F03000 5.0kb downstream 5.0kb downstream 5000 false Chr06: 42114121-42119120 Eucalyptus grandis
Eucgr.F03000 10.0kb upstream 10.0kb upstream 17267 true Chr06: 42119121-42136387 Eucalyptus grandis
Eucgr.F03000 10.0kb upstream 10.0kb upstream 10000 false Chr06: 42126388-42136387 Eucalyptus grandis
Eucgr.F03000 10.0kb downstream 10.0kb downstream 17267 true Chr06: 42109121-42126387 Eucalyptus grandis
Eucgr.F03000 10.0kb downstream 10.0kb downstream 10000 false Chr06: 42109121-42119120 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124065164 5270 Rosid View MSA
123736445 5271 Pentapetalae View MSA
122769864 5272 Eudicot View MSA
122047649 5273 Angiosperm View MSA
121350864 5274 Embryophyte View MSA
123427541 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.7825 0.0 26.9479    
cufflinks 7.36589 0.0 17.7226    
cufflinks 11.2021 0.0 38.9811    
cufflinks 7.08029 0.0 21.7295   Low
cufflinks 9.15038 0.0 23.1607    
cufflinks 17.1183 0.0 46.5747   High

0 Strain