Gene : Eucgr.F02913 E. grandis v2.0
Defline:  (1 of 2) PTHR31480:SF2 - PHYTOENE SYNTHASE, CHLOROPLASTIC Genomic Order:  2571
Name:  ? Eucgr.F02913 Secondary Identifier:  ? PAC:32057506
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis CAROTENOID-PWY Eucalyptus grandis pathologic  
Egrandis PWY-6475 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F02913 0.5kb upstream 0.5kb upstream 4966 true Chr06: 41294411-41299376 Eucalyptus grandis
Eucgr.F02913 0.5kb upstream 0.5kb upstream 500 false Chr06: 41294411-41294910 Eucalyptus grandis
Eucgr.F02913 0.5kb downstream 0.5kb downstream 4966 true Chr06: 41294911-41299876 Eucalyptus grandis
Eucgr.F02913 0.5kb downstream 0.5kb downstream 500 false Chr06: 41299377-41299876 Eucalyptus grandis
Eucgr.F02913 1.0kb upstream 1.0kb upstream 5466 true Chr06: 41293911-41299376 Eucalyptus grandis
Eucgr.F02913 1.0kb upstream 1.0kb upstream 1000 false Chr06: 41293911-41294910 Eucalyptus grandis
Eucgr.F02913 1.0kb downstream 1.0kb downstream 5466 true Chr06: 41294911-41300376 Eucalyptus grandis
Eucgr.F02913 1.0kb downstream 1.0kb downstream 1000 false Chr06: 41299377-41300376 Eucalyptus grandis
Eucgr.F02913 2.0kb upstream 2.0kb upstream 6466 true Chr06: 41292911-41299376 Eucalyptus grandis
Eucgr.F02913 2.0kb upstream 2.0kb upstream 2000 false Chr06: 41292911-41294910 Eucalyptus grandis
Eucgr.F02913 2.0kb downstream 2.0kb downstream 6466 true Chr06: 41294911-41301376 Eucalyptus grandis
Eucgr.F02913 2.0kb downstream 2.0kb downstream 2000 false Chr06: 41299377-41301376 Eucalyptus grandis
Eucgr.F02913 5.0kb upstream 5.0kb upstream 9466 true Chr06: 41289911-41299376 Eucalyptus grandis
Eucgr.F02913 5.0kb upstream 5.0kb upstream 5000 false Chr06: 41289911-41294910 Eucalyptus grandis
Eucgr.F02913 5.0kb downstream 5.0kb downstream 9466 true Chr06: 41294911-41304376 Eucalyptus grandis
Eucgr.F02913 5.0kb downstream 5.0kb downstream 5000 false Chr06: 41299377-41304376 Eucalyptus grandis
Eucgr.F02913 10.0kb upstream 10.0kb upstream 14466 true Chr06: 41284911-41299376 Eucalyptus grandis
Eucgr.F02913 10.0kb upstream 10.0kb upstream 10000 false Chr06: 41284911-41294910 Eucalyptus grandis
Eucgr.F02913 10.0kb downstream 10.0kb downstream 14466 true Chr06: 41294911-41309376 Eucalyptus grandis
Eucgr.F02913 10.0kb downstream 10.0kb downstream 10000 false Chr06: 41299377-41309376 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041269 5273 Angiosperm View MSA
124069921 5270 Rosid View MSA
123743557 5271 Pentapetalae View MSA
122795955 5272 Eudicot View MSA
121345575 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 35.945 0.0 99.5073 High  
cufflinks 17.2522 0.0 44.8041    
cufflinks 24.3608 0.0 62.7652    
cufflinks 3.55637 0.0 8.4776   Low
cufflinks 17.2439 0.0 38.8125    
cufflinks 60.1716 0.0 169.895 High High

0 Strain