Gene : Eucgr.F02882 E. grandis v2.0
Defline:  (1 of 1) PF00027//PF00520//PF11834//PF12796//PF13637 - Cyclic nucleotide-binding domain (cNMP_binding) // Ion transport protein (Ion_trans) // KHA, dimerisation domain of potassium ion channel (KHA) // Ankyrin repeats (3 copies) (Ank_2) // Ankyrin repeats (many copies) (Ank_4) Genomic Order:  2541
Name:  ? Eucgr.F02882 Secondary Identifier:  ? PAC:32055798
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F02882 0.5kb upstream 0.5kb upstream 10156 true Chr06: 40998391-41008546 Eucalyptus grandis
Eucgr.F02882 0.5kb upstream 0.5kb upstream 500 false Chr06: 40998391-40998890 Eucalyptus grandis
Eucgr.F02882 0.5kb downstream 0.5kb downstream 10156 true Chr06: 40998891-41009046 Eucalyptus grandis
Eucgr.F02882 0.5kb downstream 0.5kb downstream 500 false Chr06: 41008547-41009046 Eucalyptus grandis
Eucgr.F02882 1.0kb upstream 1.0kb upstream 10656 true Chr06: 40997891-41008546 Eucalyptus grandis
Eucgr.F02882 1.0kb upstream 1.0kb upstream 1000 false Chr06: 40997891-40998890 Eucalyptus grandis
Eucgr.F02882 1.0kb downstream 1.0kb downstream 10656 true Chr06: 40998891-41009546 Eucalyptus grandis
Eucgr.F02882 1.0kb downstream 1.0kb downstream 1000 false Chr06: 41008547-41009546 Eucalyptus grandis
Eucgr.F02882 2.0kb upstream 2.0kb upstream 11656 true Chr06: 40996891-41008546 Eucalyptus grandis
Eucgr.F02882 2.0kb upstream 2.0kb upstream 2000 false Chr06: 40996891-40998890 Eucalyptus grandis
Eucgr.F02882 2.0kb downstream 2.0kb downstream 11656 true Chr06: 40998891-41010546 Eucalyptus grandis
Eucgr.F02882 2.0kb downstream 2.0kb downstream 2000 false Chr06: 41008547-41010546 Eucalyptus grandis
Eucgr.F02882 5.0kb upstream 5.0kb upstream 14656 true Chr06: 40993891-41008546 Eucalyptus grandis
Eucgr.F02882 5.0kb upstream 5.0kb upstream 5000 false Chr06: 40993891-40998890 Eucalyptus grandis
Eucgr.F02882 5.0kb downstream 5.0kb downstream 14656 true Chr06: 40998891-41013546 Eucalyptus grandis
Eucgr.F02882 5.0kb downstream 5.0kb downstream 5000 false Chr06: 41008547-41013546 Eucalyptus grandis
Eucgr.F02882 10.0kb upstream 10.0kb upstream 19656 true Chr06: 40988891-41008546 Eucalyptus grandis
Eucgr.F02882 10.0kb upstream 10.0kb upstream 10000 false Chr06: 40988891-40998890 Eucalyptus grandis
Eucgr.F02882 10.0kb downstream 10.0kb downstream 19656 true Chr06: 40998891-41018546 Eucalyptus grandis
Eucgr.F02882 10.0kb downstream 10.0kb downstream 10000 false Chr06: 41008547-41018546 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124051826 5270 Rosid View MSA
123747890 5271 Pentapetalae View MSA
122792503 5272 Eudicot View MSA
122045299 5273 Angiosperm View MSA
121310431 5274 Embryophyte View MSA
123428762 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.00778476 0.0 0.63429 Low Low
cufflinks 8.99021 0.0 20.6938    
cufflinks 0.196866 0.0 0.816534 Low  
cufflinks 1.78728 0.0 4.88567    
cufflinks 4.40444 0.0 10.5796    
cufflinks 1.27245 0.0 4.87343    

0 Strain