Gene : Eucgr.F02847 E. grandis v2.0
Defline:  (1 of 6) 2.5.1.29 - Geranylgeranyl diphosphate synthase / Geranylgeranyl-PP synthetase Genomic Order:  2508
Name:  ? Eucgr.F02847 Secondary Identifier:  ? PAC:32053930
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-5120 Eucalyptus grandis pathologic  
Egrandis PWY-5910 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F02847 0.5kb upstream 0.5kb upstream 1364 true Chr06: 40649306-40650669 Eucalyptus grandis
Eucgr.F02847 0.5kb upstream 0.5kb upstream 500 false Chr06: 40650170-40650669 Eucalyptus grandis
Eucgr.F02847 0.5kb downstream 0.5kb downstream 1364 true Chr06: 40648806-40650169 Eucalyptus grandis
Eucgr.F02847 0.5kb downstream 0.5kb downstream 500 false Chr06: 40648806-40649305 Eucalyptus grandis
Eucgr.F02847 1.0kb upstream 1.0kb upstream 1864 true Chr06: 40649306-40651169 Eucalyptus grandis
Eucgr.F02847 1.0kb upstream 1.0kb upstream 1000 false Chr06: 40650170-40651169 Eucalyptus grandis
Eucgr.F02847 1.0kb downstream 1.0kb downstream 1864 true Chr06: 40648306-40650169 Eucalyptus grandis
Eucgr.F02847 1.0kb downstream 1.0kb downstream 1000 false Chr06: 40648306-40649305 Eucalyptus grandis
Eucgr.F02847 2.0kb upstream 2.0kb upstream 2864 true Chr06: 40649306-40652169 Eucalyptus grandis
Eucgr.F02847 2.0kb upstream 2.0kb upstream 2000 false Chr06: 40650170-40652169 Eucalyptus grandis
Eucgr.F02847 2.0kb downstream 2.0kb downstream 2864 true Chr06: 40647306-40650169 Eucalyptus grandis
Eucgr.F02847 2.0kb downstream 2.0kb downstream 2000 false Chr06: 40647306-40649305 Eucalyptus grandis
Eucgr.F02847 5.0kb upstream 5.0kb upstream 5864 true Chr06: 40649306-40655169 Eucalyptus grandis
Eucgr.F02847 5.0kb upstream 5.0kb upstream 5000 false Chr06: 40650170-40655169 Eucalyptus grandis
Eucgr.F02847 5.0kb downstream 5.0kb downstream 5864 true Chr06: 40644306-40650169 Eucalyptus grandis
Eucgr.F02847 5.0kb downstream 5.0kb downstream 5000 false Chr06: 40644306-40649305 Eucalyptus grandis
Eucgr.F02847 10.0kb upstream 10.0kb upstream 10864 true Chr06: 40649306-40660169 Eucalyptus grandis
Eucgr.F02847 10.0kb upstream 10.0kb upstream 10000 false Chr06: 40650170-40660169 Eucalyptus grandis
Eucgr.F02847 10.0kb downstream 10.0kb downstream 10864 true Chr06: 40639306-40650169 Eucalyptus grandis
Eucgr.F02847 10.0kb downstream 10.0kb downstream 10000 false Chr06: 40639306-40649305 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124051358 5270 Rosid View MSA
123745518 5271 Pentapetalae View MSA
122795597 5272 Eudicot View MSA
122051071 5273 Angiosperm View MSA
121348382 5274 Embryophyte View MSA
123424390 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.249765 0.0 0.933938 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.130738 0.0 0.592025 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain