Gene : Eucgr.F03307 E. grandis v2.0
Defline:  (1 of 1) 4.2.1.109 - Methylthioribulose 1-phosphate dehydratase / 1-PMT-ribulose dehydratase Genomic Order:  2945
Name:  ? Eucgr.F03307 Secondary Identifier:  ? PAC:32055543
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-4361 Eucalyptus grandis pathologic  
Egrandis PWY-7270 Eucalyptus grandis pathologic  
Egrandis PWY-7528 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F03307 0.5kb upstream 0.5kb upstream 6973 true Chr06: 44614455-44621427 Eucalyptus grandis
Eucgr.F03307 0.5kb upstream 0.5kb upstream 500 false Chr06: 44614455-44614954 Eucalyptus grandis
Eucgr.F03307 0.5kb downstream 0.5kb downstream 6973 true Chr06: 44614955-44621927 Eucalyptus grandis
Eucgr.F03307 0.5kb downstream 0.5kb downstream 500 false Chr06: 44621428-44621927 Eucalyptus grandis
Eucgr.F03307 1.0kb upstream 1.0kb upstream 7473 true Chr06: 44613955-44621427 Eucalyptus grandis
Eucgr.F03307 1.0kb upstream 1.0kb upstream 1000 false Chr06: 44613955-44614954 Eucalyptus grandis
Eucgr.F03307 1.0kb downstream 1.0kb downstream 7473 true Chr06: 44614955-44622427 Eucalyptus grandis
Eucgr.F03307 1.0kb downstream 1.0kb downstream 1000 false Chr06: 44621428-44622427 Eucalyptus grandis
Eucgr.F03307 2.0kb upstream 2.0kb upstream 8473 true Chr06: 44612955-44621427 Eucalyptus grandis
Eucgr.F03307 2.0kb upstream 2.0kb upstream 2000 false Chr06: 44612955-44614954 Eucalyptus grandis
Eucgr.F03307 2.0kb downstream 2.0kb downstream 8473 true Chr06: 44614955-44623427 Eucalyptus grandis
Eucgr.F03307 2.0kb downstream 2.0kb downstream 2000 false Chr06: 44621428-44623427 Eucalyptus grandis
Eucgr.F03307 5.0kb upstream 5.0kb upstream 11473 true Chr06: 44609955-44621427 Eucalyptus grandis
Eucgr.F03307 5.0kb upstream 5.0kb upstream 5000 false Chr06: 44609955-44614954 Eucalyptus grandis
Eucgr.F03307 5.0kb downstream 5.0kb downstream 11473 true Chr06: 44614955-44626427 Eucalyptus grandis
Eucgr.F03307 5.0kb downstream 5.0kb downstream 5000 false Chr06: 44621428-44626427 Eucalyptus grandis
Eucgr.F03307 10.0kb upstream 10.0kb upstream 16473 true Chr06: 44604955-44621427 Eucalyptus grandis
Eucgr.F03307 10.0kb upstream 10.0kb upstream 10000 false Chr06: 44604955-44614954 Eucalyptus grandis
Eucgr.F03307 10.0kb downstream 10.0kb downstream 16473 true Chr06: 44614955-44631427 Eucalyptus grandis
Eucgr.F03307 10.0kb downstream 10.0kb downstream 10000 false Chr06: 44621428-44631427 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124067379 5270 Rosid View MSA
123736573 5271 Pentapetalae View MSA
122786615 5272 Eudicot View MSA
122042020 5273 Angiosperm View MSA
121345843 5274 Embryophyte View MSA
123425019 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.4272 0.0 32.2422    
cufflinks 7.12096 0.0 16.5859    
cufflinks 16.8032 0.0 37.3434   High
cufflinks 4.53232 0.0 10.9652   Low
cufflinks 9.56244 0.0 21.7935    
cufflinks 8.10432 0.0 18.7333    

0 Strain