Gene : Eucgr.F03698 E. grandis v2.0
Defline:  (1 of 1) PTHR23416:SF56 - SERINE ACETYLTRANSFERASE 1, CHLOROPLASTIC-RELATED Genomic Order:  3294
Name:  ? Eucgr.F03698 Secondary Identifier:  ? PAC:32055018
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis CYSTSYN-PWY Eucalyptus grandis pathologic  
Egrandis PWY-6936 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F03698 0.5kb upstream 0.5kb upstream 2687 true Chr06: 47733697-47736383 Eucalyptus grandis
Eucgr.F03698 0.5kb upstream 0.5kb upstream 500 false Chr06: 47733697-47734196 Eucalyptus grandis
Eucgr.F03698 0.5kb downstream 0.5kb downstream 2687 true Chr06: 47734197-47736883 Eucalyptus grandis
Eucgr.F03698 0.5kb downstream 0.5kb downstream 500 false Chr06: 47736384-47736883 Eucalyptus grandis
Eucgr.F03698 1.0kb upstream 1.0kb upstream 3187 true Chr06: 47733197-47736383 Eucalyptus grandis
Eucgr.F03698 1.0kb upstream 1.0kb upstream 1000 false Chr06: 47733197-47734196 Eucalyptus grandis
Eucgr.F03698 1.0kb downstream 1.0kb downstream 3187 true Chr06: 47734197-47737383 Eucalyptus grandis
Eucgr.F03698 1.0kb downstream 1.0kb downstream 1000 false Chr06: 47736384-47737383 Eucalyptus grandis
Eucgr.F03698 2.0kb upstream 2.0kb upstream 4187 true Chr06: 47732197-47736383 Eucalyptus grandis
Eucgr.F03698 2.0kb upstream 2.0kb upstream 2000 false Chr06: 47732197-47734196 Eucalyptus grandis
Eucgr.F03698 2.0kb downstream 2.0kb downstream 4187 true Chr06: 47734197-47738383 Eucalyptus grandis
Eucgr.F03698 2.0kb downstream 2.0kb downstream 2000 false Chr06: 47736384-47738383 Eucalyptus grandis
Eucgr.F03698 5.0kb upstream 5.0kb upstream 7187 true Chr06: 47729197-47736383 Eucalyptus grandis
Eucgr.F03698 5.0kb upstream 5.0kb upstream 5000 false Chr06: 47729197-47734196 Eucalyptus grandis
Eucgr.F03698 5.0kb downstream 5.0kb downstream 7187 true Chr06: 47734197-47741383 Eucalyptus grandis
Eucgr.F03698 5.0kb downstream 5.0kb downstream 5000 false Chr06: 47736384-47741383 Eucalyptus grandis
Eucgr.F03698 10.0kb upstream 10.0kb upstream 12187 true Chr06: 47724197-47736383 Eucalyptus grandis
Eucgr.F03698 10.0kb upstream 10.0kb upstream 10000 false Chr06: 47724197-47734196 Eucalyptus grandis
Eucgr.F03698 10.0kb downstream 10.0kb downstream 12187 true Chr06: 47734197-47746383 Eucalyptus grandis
Eucgr.F03698 10.0kb downstream 10.0kb downstream 10000 false Chr06: 47736384-47746383 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124069334 5270 Rosid View MSA
123751427 5271 Pentapetalae View MSA
122788280 5272 Eudicot View MSA
122045055 5273 Angiosperm View MSA
121348374 5274 Embryophyte View MSA
123426625 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.7885 0.0 74.6857 High  
cufflinks 27.1892 0.0 61.3826    
cufflinks 21.7081 0.0 54.5541   Low
cufflinks 28.2357 0.0 70.2993    
cufflinks 52.3061 0.0 135.23 High High
cufflinks 30.3059 0.0 76.9347    

0 Strain