Gene : Eucgr.F03540 E. grandis v2.0
Defline:  (1 of 1) PTHR11807:SF12 - CYTOPLASMIC TRNA 2-THIOLATION PROTEIN 1 Genomic Order:  3157
Name:  ? Eucgr.F03540 Secondary Identifier:  ? PAC:32057637
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F03540 0.5kb upstream 0.5kb upstream 4584 true Chr06: 46480531-46485114 Eucalyptus grandis
Eucgr.F03540 0.5kb upstream 0.5kb upstream 500 false Chr06: 46484615-46485114 Eucalyptus grandis
Eucgr.F03540 0.5kb downstream 0.5kb downstream 4584 true Chr06: 46480031-46484614 Eucalyptus grandis
Eucgr.F03540 0.5kb downstream 0.5kb downstream 500 false Chr06: 46480031-46480530 Eucalyptus grandis
Eucgr.F03540 1.0kb upstream 1.0kb upstream 5084 true Chr06: 46480531-46485614 Eucalyptus grandis
Eucgr.F03540 1.0kb upstream 1.0kb upstream 1000 false Chr06: 46484615-46485614 Eucalyptus grandis
Eucgr.F03540 1.0kb downstream 1.0kb downstream 5084 true Chr06: 46479531-46484614 Eucalyptus grandis
Eucgr.F03540 1.0kb downstream 1.0kb downstream 1000 false Chr06: 46479531-46480530 Eucalyptus grandis
Eucgr.F03540 2.0kb upstream 2.0kb upstream 6084 true Chr06: 46480531-46486614 Eucalyptus grandis
Eucgr.F03540 2.0kb upstream 2.0kb upstream 2000 false Chr06: 46484615-46486614 Eucalyptus grandis
Eucgr.F03540 2.0kb downstream 2.0kb downstream 6084 true Chr06: 46478531-46484614 Eucalyptus grandis
Eucgr.F03540 2.0kb downstream 2.0kb downstream 2000 false Chr06: 46478531-46480530 Eucalyptus grandis
Eucgr.F03540 5.0kb upstream 5.0kb upstream 9084 true Chr06: 46480531-46489614 Eucalyptus grandis
Eucgr.F03540 5.0kb upstream 5.0kb upstream 5000 false Chr06: 46484615-46489614 Eucalyptus grandis
Eucgr.F03540 5.0kb downstream 5.0kb downstream 9084 true Chr06: 46475531-46484614 Eucalyptus grandis
Eucgr.F03540 5.0kb downstream 5.0kb downstream 5000 false Chr06: 46475531-46480530 Eucalyptus grandis
Eucgr.F03540 10.0kb upstream 10.0kb upstream 14084 true Chr06: 46480531-46494614 Eucalyptus grandis
Eucgr.F03540 10.0kb upstream 10.0kb upstream 10000 false Chr06: 46484615-46494614 Eucalyptus grandis
Eucgr.F03540 10.0kb downstream 10.0kb downstream 14084 true Chr06: 46470531-46484614 Eucalyptus grandis
Eucgr.F03540 10.0kb downstream 10.0kb downstream 10000 false Chr06: 46470531-46480530 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124064054 5270 Rosid View MSA
123742084 5271 Pentapetalae View MSA
122790612 5272 Eudicot View MSA
122048376 5273 Angiosperm View MSA
121346123 5274 Embryophyte View MSA
123424890 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.1848 0.0 29.7158    
cufflinks 8.34785 0.0 19.3083   Low
cufflinks 12.1138 0.0 27.3633    
cufflinks 8.16926 0.0 18.8727   Low
cufflinks 13.9056 0.0 31.2015    
cufflinks 13.4679 0.0 30.3697    

0 Strain