Gene : Eucgr.F03541 E. grandis v2.0
Defline:  (1 of 1) PTHR10742:SF246 - LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 1 Genomic Order:  3158
Name:  ? Eucgr.F03541 Secondary Identifier:  ? PAC:32053764
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-6441 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F03541 0.5kb upstream 0.5kb upstream 4050 true Chr06: 46486013-46490062 Eucalyptus grandis
Eucgr.F03541 0.5kb upstream 0.5kb upstream 500 false Chr06: 46489563-46490062 Eucalyptus grandis
Eucgr.F03541 0.5kb downstream 0.5kb downstream 4050 true Chr06: 46485513-46489562 Eucalyptus grandis
Eucgr.F03541 0.5kb downstream 0.5kb downstream 500 false Chr06: 46485513-46486012 Eucalyptus grandis
Eucgr.F03541 1.0kb upstream 1.0kb upstream 4550 true Chr06: 46486013-46490562 Eucalyptus grandis
Eucgr.F03541 1.0kb upstream 1.0kb upstream 1000 false Chr06: 46489563-46490562 Eucalyptus grandis
Eucgr.F03541 1.0kb downstream 1.0kb downstream 4550 true Chr06: 46485013-46489562 Eucalyptus grandis
Eucgr.F03541 1.0kb downstream 1.0kb downstream 1000 false Chr06: 46485013-46486012 Eucalyptus grandis
Eucgr.F03541 2.0kb upstream 2.0kb upstream 5550 true Chr06: 46486013-46491562 Eucalyptus grandis
Eucgr.F03541 2.0kb upstream 2.0kb upstream 2000 false Chr06: 46489563-46491562 Eucalyptus grandis
Eucgr.F03541 2.0kb downstream 2.0kb downstream 5550 true Chr06: 46484013-46489562 Eucalyptus grandis
Eucgr.F03541 2.0kb downstream 2.0kb downstream 2000 false Chr06: 46484013-46486012 Eucalyptus grandis
Eucgr.F03541 5.0kb upstream 5.0kb upstream 8550 true Chr06: 46486013-46494562 Eucalyptus grandis
Eucgr.F03541 5.0kb upstream 5.0kb upstream 5000 false Chr06: 46489563-46494562 Eucalyptus grandis
Eucgr.F03541 5.0kb downstream 5.0kb downstream 8550 true Chr06: 46481013-46489562 Eucalyptus grandis
Eucgr.F03541 5.0kb downstream 5.0kb downstream 5000 false Chr06: 46481013-46486012 Eucalyptus grandis
Eucgr.F03541 10.0kb upstream 10.0kb upstream 13550 true Chr06: 46486013-46499562 Eucalyptus grandis
Eucgr.F03541 10.0kb upstream 10.0kb upstream 10000 false Chr06: 46489563-46499562 Eucalyptus grandis
Eucgr.F03541 10.0kb downstream 10.0kb downstream 13550 true Chr06: 46476013-46489562 Eucalyptus grandis
Eucgr.F03541 10.0kb downstream 10.0kb downstream 10000 false Chr06: 46476013-46486012 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062162 5270 Rosid View MSA
123738234 5271 Pentapetalae View MSA
122786001 5272 Eudicot View MSA
122043910 5273 Angiosperm View MSA
121310209 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.54295 0.0 16.8871   High
cufflinks 3.3527 0.0 7.90794    
cufflinks 5.58531 0.0 12.6775    
cufflinks 5.57082 0.0 12.6081    
cufflinks 2.85457 0.0 6.85036    
cufflinks 2.62655 0.0 6.37142   Low

0 Strain