Gene : Eucgr.F03492 E. grandis v2.0
Defline:  (1 of 1) 2.1.3.2 - Aspartate carbamoyltransferase / Carbamylaspartotranskinase Genomic Order:  3109
Name:  ? Eucgr.F03492 Secondary Identifier:  ? PAC:32055678
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY0-162 Eucalyptus grandis pathologic  
Egrandis PWY-5686 Eucalyptus grandis pathologic  
Egrandis PWY-7211 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F03492 0.5kb upstream 0.5kb upstream 4324 true Chr06: 46173423-46177746 Eucalyptus grandis
Eucgr.F03492 0.5kb upstream 0.5kb upstream 500 false Chr06: 46173423-46173922 Eucalyptus grandis
Eucgr.F03492 0.5kb downstream 0.5kb downstream 4324 true Chr06: 46173923-46178246 Eucalyptus grandis
Eucgr.F03492 0.5kb downstream 0.5kb downstream 500 false Chr06: 46177747-46178246 Eucalyptus grandis
Eucgr.F03492 1.0kb upstream 1.0kb upstream 4824 true Chr06: 46172923-46177746 Eucalyptus grandis
Eucgr.F03492 1.0kb upstream 1.0kb upstream 1000 false Chr06: 46172923-46173922 Eucalyptus grandis
Eucgr.F03492 1.0kb downstream 1.0kb downstream 4824 true Chr06: 46173923-46178746 Eucalyptus grandis
Eucgr.F03492 1.0kb downstream 1.0kb downstream 1000 false Chr06: 46177747-46178746 Eucalyptus grandis
Eucgr.F03492 2.0kb upstream 2.0kb upstream 5824 true Chr06: 46171923-46177746 Eucalyptus grandis
Eucgr.F03492 2.0kb upstream 2.0kb upstream 2000 false Chr06: 46171923-46173922 Eucalyptus grandis
Eucgr.F03492 2.0kb downstream 2.0kb downstream 5824 true Chr06: 46173923-46179746 Eucalyptus grandis
Eucgr.F03492 2.0kb downstream 2.0kb downstream 2000 false Chr06: 46177747-46179746 Eucalyptus grandis
Eucgr.F03492 5.0kb upstream 5.0kb upstream 8824 true Chr06: 46168923-46177746 Eucalyptus grandis
Eucgr.F03492 5.0kb upstream 5.0kb upstream 5000 false Chr06: 46168923-46173922 Eucalyptus grandis
Eucgr.F03492 5.0kb downstream 5.0kb downstream 8824 true Chr06: 46173923-46182746 Eucalyptus grandis
Eucgr.F03492 5.0kb downstream 5.0kb downstream 5000 false Chr06: 46177747-46182746 Eucalyptus grandis
Eucgr.F03492 10.0kb upstream 10.0kb upstream 13824 true Chr06: 46163923-46177746 Eucalyptus grandis
Eucgr.F03492 10.0kb upstream 10.0kb upstream 10000 false Chr06: 46163923-46173922 Eucalyptus grandis
Eucgr.F03492 10.0kb downstream 10.0kb downstream 13824 true Chr06: 46173923-46187746 Eucalyptus grandis
Eucgr.F03492 10.0kb downstream 10.0kb downstream 10000 false Chr06: 46177747-46187746 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124063971 5270 Rosid View MSA
123737455 5271 Pentapetalae View MSA
122791226 5272 Eudicot View MSA
122047002 5273 Angiosperm View MSA
121345349 5274 Embryophyte View MSA
123427161 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.0944 0.0 5.64401    
cufflinks 0.426375 0.0 1.3727 Low Low
cufflinks 3.83369 0.0 9.73554    
cufflinks 3.00622 0.0 7.81616    
cufflinks 6.49741 0.0 15.6593   High
cufflinks 3.45096 0.0 8.85966    

0 Strain