Gene : Eucgr.F03427 E. grandis v2.0
Defline:  (1 of 235) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  3049
Name:  ? Eucgr.F03427 Secondary Identifier:  ? PAC:32053999
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F03427 0.5kb upstream 0.5kb upstream 12242 true Chr06: 45767126-45779367 Eucalyptus grandis
Eucgr.F03427 0.5kb upstream 0.5kb upstream 500 false Chr06: 45778868-45779367 Eucalyptus grandis
Eucgr.F03427 0.5kb downstream 0.5kb downstream 12242 true Chr06: 45766626-45778867 Eucalyptus grandis
Eucgr.F03427 0.5kb downstream 0.5kb downstream 500 false Chr06: 45766626-45767125 Eucalyptus grandis
Eucgr.F03427 1.0kb upstream 1.0kb upstream 12742 true Chr06: 45767126-45779867 Eucalyptus grandis
Eucgr.F03427 1.0kb upstream 1.0kb upstream 1000 false Chr06: 45778868-45779867 Eucalyptus grandis
Eucgr.F03427 1.0kb downstream 1.0kb downstream 12742 true Chr06: 45766126-45778867 Eucalyptus grandis
Eucgr.F03427 1.0kb downstream 1.0kb downstream 1000 false Chr06: 45766126-45767125 Eucalyptus grandis
Eucgr.F03427 2.0kb upstream 2.0kb upstream 13742 true Chr06: 45767126-45780867 Eucalyptus grandis
Eucgr.F03427 2.0kb upstream 2.0kb upstream 2000 false Chr06: 45778868-45780867 Eucalyptus grandis
Eucgr.F03427 2.0kb downstream 2.0kb downstream 13742 true Chr06: 45765126-45778867 Eucalyptus grandis
Eucgr.F03427 2.0kb downstream 2.0kb downstream 2000 false Chr06: 45765126-45767125 Eucalyptus grandis
Eucgr.F03427 5.0kb upstream 5.0kb upstream 16742 true Chr06: 45767126-45783867 Eucalyptus grandis
Eucgr.F03427 5.0kb upstream 5.0kb upstream 5000 false Chr06: 45778868-45783867 Eucalyptus grandis
Eucgr.F03427 5.0kb downstream 5.0kb downstream 16742 true Chr06: 45762126-45778867 Eucalyptus grandis
Eucgr.F03427 5.0kb downstream 5.0kb downstream 5000 false Chr06: 45762126-45767125 Eucalyptus grandis
Eucgr.F03427 10.0kb upstream 10.0kb upstream 21742 true Chr06: 45767126-45788867 Eucalyptus grandis
Eucgr.F03427 10.0kb upstream 10.0kb upstream 10000 false Chr06: 45778868-45788867 Eucalyptus grandis
Eucgr.F03427 10.0kb downstream 10.0kb downstream 21742 true Chr06: 45757126-45778867 Eucalyptus grandis
Eucgr.F03427 10.0kb downstream 10.0kb downstream 10000 false Chr06: 45757126-45767125 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124071393 5270 Rosid View MSA
123738469 5271 Pentapetalae View MSA
122788721 5272 Eudicot View MSA
122045808 5273 Angiosperm View MSA
121347981 5274 Embryophyte View MSA
123380700 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.80506 0.0 17.3484    
cufflinks 2.69621 0.0 7.79441   Low
cufflinks 7.14526 0.0 20.2359    
cufflinks 2.7139 0.0 8.21198   Low
cufflinks 4.73292 0.0 12.7856    
cufflinks 7.35592 0.0 19.3208    

0 Strain