Gene : Eucgr.F04043 E. grandis v2.0
Defline:  (1 of 3) PF00432//PF13249 - Prenyltransferase and squalene oxidase repeat (Prenyltrans) // Squalene-hopene cyclase N-terminal domain (SQHop_cyclase_N) Genomic Order:  3599
Name:  ? Eucgr.F04043 Secondary Identifier:  ? PAC:32056582
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-5203 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F04043 0.5kb upstream 0.5kb upstream 6685 true Chr06: 51134146-51140830 Eucalyptus grandis
Eucgr.F04043 0.5kb upstream 0.5kb upstream 500 false Chr06: 51140331-51140830 Eucalyptus grandis
Eucgr.F04043 0.5kb downstream 0.5kb downstream 6685 true Chr06: 51133646-51140330 Eucalyptus grandis
Eucgr.F04043 0.5kb downstream 0.5kb downstream 500 false Chr06: 51133646-51134145 Eucalyptus grandis
Eucgr.F04043 1.0kb upstream 1.0kb upstream 7185 true Chr06: 51134146-51141330 Eucalyptus grandis
Eucgr.F04043 1.0kb upstream 1.0kb upstream 1000 false Chr06: 51140331-51141330 Eucalyptus grandis
Eucgr.F04043 1.0kb downstream 1.0kb downstream 7185 true Chr06: 51133146-51140330 Eucalyptus grandis
Eucgr.F04043 1.0kb downstream 1.0kb downstream 1000 false Chr06: 51133146-51134145 Eucalyptus grandis
Eucgr.F04043 2.0kb upstream 2.0kb upstream 8185 true Chr06: 51134146-51142330 Eucalyptus grandis
Eucgr.F04043 2.0kb upstream 2.0kb upstream 2000 false Chr06: 51140331-51142330 Eucalyptus grandis
Eucgr.F04043 2.0kb downstream 2.0kb downstream 8185 true Chr06: 51132146-51140330 Eucalyptus grandis
Eucgr.F04043 2.0kb downstream 2.0kb downstream 2000 false Chr06: 51132146-51134145 Eucalyptus grandis
Eucgr.F04043 5.0kb upstream 5.0kb upstream 11185 true Chr06: 51134146-51145330 Eucalyptus grandis
Eucgr.F04043 5.0kb upstream 5.0kb upstream 5000 false Chr06: 51140331-51145330 Eucalyptus grandis
Eucgr.F04043 5.0kb downstream 5.0kb downstream 11185 true Chr06: 51129146-51140330 Eucalyptus grandis
Eucgr.F04043 5.0kb downstream 5.0kb downstream 5000 false Chr06: 51129146-51134145 Eucalyptus grandis
Eucgr.F04043 10.0kb upstream 10.0kb upstream 16185 true Chr06: 51134146-51150330 Eucalyptus grandis
Eucgr.F04043 10.0kb upstream 10.0kb upstream 10000 false Chr06: 51140331-51150330 Eucalyptus grandis
Eucgr.F04043 10.0kb downstream 10.0kb downstream 16185 true Chr06: 51124146-51140330 Eucalyptus grandis
Eucgr.F04043 10.0kb downstream 10.0kb downstream 10000 false Chr06: 51124146-51134145 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028235 5273 Angiosperm View MSA
124052067 5270 Rosid View MSA
123750414 5271 Pentapetalae View MSA
122773643 5272 Eudicot View MSA
121297756 5274 Embryophyte View MSA
123335781 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.096332 0.0 0.360337 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.373403 0.0 1.16395 Low  
cufflinks 0.0245245 0.0 0.141468 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.284645 0.0 0.922799 Low  

0 Strain