Gene : Eucgr.F04000 E. grandis v2.0
Defline:  (1 of 2) PF00389//PF01842//PF07991 - D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (2-Hacid_dh) // ACT domain (ACT) // Acetohydroxy acid isomeroreductase, NADPH-binding domain (IlvN) Genomic Order:  3557
Name:  ? Eucgr.F04000 Secondary Identifier:  ? PAC:32055423
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis SER-GLYSYN-PWY Eucalyptus grandis pathologic  
Egrandis SERSYN-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F04000 0.5kb upstream 0.5kb upstream 6325 true Chr06: 50704072-50710396 Eucalyptus grandis
Eucgr.F04000 0.5kb upstream 0.5kb upstream 500 false Chr06: 50704072-50704571 Eucalyptus grandis
Eucgr.F04000 0.5kb downstream 0.5kb downstream 6325 true Chr06: 50704572-50710896 Eucalyptus grandis
Eucgr.F04000 0.5kb downstream 0.5kb downstream 500 false Chr06: 50710397-50710896 Eucalyptus grandis
Eucgr.F04000 1.0kb upstream 1.0kb upstream 6825 true Chr06: 50703572-50710396 Eucalyptus grandis
Eucgr.F04000 1.0kb upstream 1.0kb upstream 1000 false Chr06: 50703572-50704571 Eucalyptus grandis
Eucgr.F04000 1.0kb downstream 1.0kb downstream 6825 true Chr06: 50704572-50711396 Eucalyptus grandis
Eucgr.F04000 1.0kb downstream 1.0kb downstream 1000 false Chr06: 50710397-50711396 Eucalyptus grandis
Eucgr.F04000 2.0kb upstream 2.0kb upstream 7825 true Chr06: 50702572-50710396 Eucalyptus grandis
Eucgr.F04000 2.0kb upstream 2.0kb upstream 2000 false Chr06: 50702572-50704571 Eucalyptus grandis
Eucgr.F04000 2.0kb downstream 2.0kb downstream 7825 true Chr06: 50704572-50712396 Eucalyptus grandis
Eucgr.F04000 2.0kb downstream 2.0kb downstream 2000 false Chr06: 50710397-50712396 Eucalyptus grandis
Eucgr.F04000 5.0kb upstream 5.0kb upstream 10825 true Chr06: 50699572-50710396 Eucalyptus grandis
Eucgr.F04000 5.0kb upstream 5.0kb upstream 5000 false Chr06: 50699572-50704571 Eucalyptus grandis
Eucgr.F04000 5.0kb downstream 5.0kb downstream 10825 true Chr06: 50704572-50715396 Eucalyptus grandis
Eucgr.F04000 5.0kb downstream 5.0kb downstream 5000 false Chr06: 50710397-50715396 Eucalyptus grandis
Eucgr.F04000 10.0kb upstream 10.0kb upstream 15825 true Chr06: 50694572-50710396 Eucalyptus grandis
Eucgr.F04000 10.0kb upstream 10.0kb upstream 10000 false Chr06: 50694572-50704571 Eucalyptus grandis
Eucgr.F04000 10.0kb downstream 10.0kb downstream 15825 true Chr06: 50704572-50720396 Eucalyptus grandis
Eucgr.F04000 10.0kb downstream 10.0kb downstream 10000 false Chr06: 50710397-50720396 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124069252 5270 Rosid View MSA
123744106 5271 Pentapetalae View MSA
122795023 5272 Eudicot View MSA
122044765 5273 Angiosperm View MSA
121347094 5274 Embryophyte View MSA
123427510 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 59.2713 0.0 137.645 High  
cufflinks 117.515 0.0 298.335 High High
cufflinks 33.6279 0.0 78.7452 High  
cufflinks 109.405 0.0 273.486 High High
cufflinks 19.1559 0.0 43.4017   Low
cufflinks 22.6648 0.0 51.832    

0 Strain