Gene : Eucgr.F04004 E. grandis v2.0
Defline:  (1 of 235) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  3561
Name:  ? Eucgr.F04004 Secondary Identifier:  ? PAC:32055414
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F04004 0.5kb upstream 0.5kb upstream 2942 true Chr06: 50718874-50721815 Eucalyptus grandis
Eucgr.F04004 0.5kb upstream 0.5kb upstream 500 false Chr06: 50718874-50719373 Eucalyptus grandis
Eucgr.F04004 0.5kb downstream 0.5kb downstream 2942 true Chr06: 50719374-50722315 Eucalyptus grandis
Eucgr.F04004 0.5kb downstream 0.5kb downstream 500 false Chr06: 50721816-50722315 Eucalyptus grandis
Eucgr.F04004 1.0kb upstream 1.0kb upstream 3442 true Chr06: 50718374-50721815 Eucalyptus grandis
Eucgr.F04004 1.0kb upstream 1.0kb upstream 1000 false Chr06: 50718374-50719373 Eucalyptus grandis
Eucgr.F04004 1.0kb downstream 1.0kb downstream 3442 true Chr06: 50719374-50722815 Eucalyptus grandis
Eucgr.F04004 1.0kb downstream 1.0kb downstream 1000 false Chr06: 50721816-50722815 Eucalyptus grandis
Eucgr.F04004 2.0kb upstream 2.0kb upstream 4442 true Chr06: 50717374-50721815 Eucalyptus grandis
Eucgr.F04004 2.0kb upstream 2.0kb upstream 2000 false Chr06: 50717374-50719373 Eucalyptus grandis
Eucgr.F04004 2.0kb downstream 2.0kb downstream 4442 true Chr06: 50719374-50723815 Eucalyptus grandis
Eucgr.F04004 2.0kb downstream 2.0kb downstream 2000 false Chr06: 50721816-50723815 Eucalyptus grandis
Eucgr.F04004 5.0kb upstream 5.0kb upstream 7442 true Chr06: 50714374-50721815 Eucalyptus grandis
Eucgr.F04004 5.0kb upstream 5.0kb upstream 5000 false Chr06: 50714374-50719373 Eucalyptus grandis
Eucgr.F04004 5.0kb downstream 5.0kb downstream 7442 true Chr06: 50719374-50726815 Eucalyptus grandis
Eucgr.F04004 5.0kb downstream 5.0kb downstream 5000 false Chr06: 50721816-50726815 Eucalyptus grandis
Eucgr.F04004 10.0kb upstream 10.0kb upstream 12442 true Chr06: 50709374-50721815 Eucalyptus grandis
Eucgr.F04004 10.0kb upstream 10.0kb upstream 10000 false Chr06: 50709374-50719373 Eucalyptus grandis
Eucgr.F04004 10.0kb downstream 10.0kb downstream 12442 true Chr06: 50719374-50731815 Eucalyptus grandis
Eucgr.F04004 10.0kb downstream 10.0kb downstream 10000 false Chr06: 50721816-50731815 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041217 5273 Angiosperm View MSA
124067032 5270 Rosid View MSA
123740390 5271 Pentapetalae View MSA
122769977 5272 Eudicot View MSA
121309817 5274 Embryophyte View MSA
123347469 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.66083 0.0 6.7691    
cufflinks 1.63152 0.0 4.31109    
cufflinks 2.6371 0.0 6.67293    
cufflinks 2.20881 0.0 5.65224    
cufflinks 1.1983 0.0 3.28604   Low
cufflinks 5.08418 0.0 12.1745   High

0 Strain