Gene : Eucgr.F03948 E. grandis v2.0
Defline:  (1 of 1) PTHR23198:SF0 - NUCLEAR PORE COMPLEX PROTEIN NUP96 HOMOLOG Genomic Order:  3507
Name:  ? Eucgr.F03948 Secondary Identifier:  ? PAC:32054275
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F03948 0.5kb upstream 0.5kb upstream 7862 true Chr06: 50301073-50308934 Eucalyptus grandis
Eucgr.F03948 0.5kb upstream 0.5kb upstream 500 false Chr06: 50301073-50301572 Eucalyptus grandis
Eucgr.F03948 0.5kb downstream 0.5kb downstream 7862 true Chr06: 50301573-50309434 Eucalyptus grandis
Eucgr.F03948 0.5kb downstream 0.5kb downstream 500 false Chr06: 50308935-50309434 Eucalyptus grandis
Eucgr.F03948 1.0kb upstream 1.0kb upstream 8362 true Chr06: 50300573-50308934 Eucalyptus grandis
Eucgr.F03948 1.0kb upstream 1.0kb upstream 1000 false Chr06: 50300573-50301572 Eucalyptus grandis
Eucgr.F03948 1.0kb downstream 1.0kb downstream 8362 true Chr06: 50301573-50309934 Eucalyptus grandis
Eucgr.F03948 1.0kb downstream 1.0kb downstream 1000 false Chr06: 50308935-50309934 Eucalyptus grandis
Eucgr.F03948 2.0kb upstream 2.0kb upstream 9362 true Chr06: 50299573-50308934 Eucalyptus grandis
Eucgr.F03948 2.0kb upstream 2.0kb upstream 2000 false Chr06: 50299573-50301572 Eucalyptus grandis
Eucgr.F03948 2.0kb downstream 2.0kb downstream 9362 true Chr06: 50301573-50310934 Eucalyptus grandis
Eucgr.F03948 2.0kb downstream 2.0kb downstream 2000 false Chr06: 50308935-50310934 Eucalyptus grandis
Eucgr.F03948 5.0kb upstream 5.0kb upstream 12362 true Chr06: 50296573-50308934 Eucalyptus grandis
Eucgr.F03948 5.0kb upstream 5.0kb upstream 5000 false Chr06: 50296573-50301572 Eucalyptus grandis
Eucgr.F03948 5.0kb downstream 5.0kb downstream 12362 true Chr06: 50301573-50313934 Eucalyptus grandis
Eucgr.F03948 5.0kb downstream 5.0kb downstream 5000 false Chr06: 50308935-50313934 Eucalyptus grandis
Eucgr.F03948 10.0kb upstream 10.0kb upstream 17362 true Chr06: 50291573-50308934 Eucalyptus grandis
Eucgr.F03948 10.0kb upstream 10.0kb upstream 10000 false Chr06: 50291573-50301572 Eucalyptus grandis
Eucgr.F03948 10.0kb downstream 10.0kb downstream 17362 true Chr06: 50301573-50318934 Eucalyptus grandis
Eucgr.F03948 10.0kb downstream 10.0kb downstream 10000 false Chr06: 50308935-50318934 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062118 5270 Rosid View MSA
123738828 5271 Pentapetalae View MSA
122786921 5272 Eudicot View MSA
122043247 5273 Angiosperm View MSA
121310093 5274 Embryophyte View MSA
123347679 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.70859 0.0 10.7247    
cufflinks 4.89977 0.0 11.0709    
cufflinks 4.43869 0.0 10.1116    
cufflinks 2.75189 0.0 6.47775   Low
cufflinks 3.99467 0.0 9.18254    
cufflinks 4.4552 0.0 10.2365    

0 Strain