Gene : Eucgr.F04425 E. grandis v2.0
Defline:  (1 of 3) 6.1.1.9 - Valine--tRNA ligase / Valyl-tRNA synthetase Genomic Order:  3994
Name:  ? Eucgr.F04425 Secondary Identifier:  ? PAC:32057194
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis TRNA-CHARGING-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F04425 0.5kb upstream 0.5kb upstream 13552 true Chr06: 56816546-56830097 Eucalyptus grandis
Eucgr.F04425 0.5kb upstream 0.5kb upstream 500 false Chr06: 56816546-56817045 Eucalyptus grandis
Eucgr.F04425 0.5kb downstream 0.5kb downstream 13552 true Chr06: 56817046-56830597 Eucalyptus grandis
Eucgr.F04425 0.5kb downstream 0.5kb downstream 500 false Chr06: 56830098-56830597 Eucalyptus grandis
Eucgr.F04425 1.0kb upstream 1.0kb upstream 14052 true Chr06: 56816046-56830097 Eucalyptus grandis
Eucgr.F04425 1.0kb upstream 1.0kb upstream 1000 false Chr06: 56816046-56817045 Eucalyptus grandis
Eucgr.F04425 1.0kb downstream 1.0kb downstream 14052 true Chr06: 56817046-56831097 Eucalyptus grandis
Eucgr.F04425 1.0kb downstream 1.0kb downstream 1000 false Chr06: 56830098-56831097 Eucalyptus grandis
Eucgr.F04425 2.0kb upstream 2.0kb upstream 15052 true Chr06: 56815046-56830097 Eucalyptus grandis
Eucgr.F04425 2.0kb upstream 2.0kb upstream 2000 false Chr06: 56815046-56817045 Eucalyptus grandis
Eucgr.F04425 2.0kb downstream 2.0kb downstream 15052 true Chr06: 56817046-56832097 Eucalyptus grandis
Eucgr.F04425 2.0kb downstream 2.0kb downstream 2000 false Chr06: 56830098-56832097 Eucalyptus grandis
Eucgr.F04425 5.0kb upstream 5.0kb upstream 18052 true Chr06: 56812046-56830097 Eucalyptus grandis
Eucgr.F04425 5.0kb upstream 5.0kb upstream 5000 false Chr06: 56812046-56817045 Eucalyptus grandis
Eucgr.F04425 5.0kb downstream 5.0kb downstream 18052 true Chr06: 56817046-56835097 Eucalyptus grandis
Eucgr.F04425 5.0kb downstream 5.0kb downstream 5000 false Chr06: 56830098-56835097 Eucalyptus grandis
Eucgr.F04425 10.0kb upstream 10.0kb upstream 23052 true Chr06: 56807046-56830097 Eucalyptus grandis
Eucgr.F04425 10.0kb upstream 10.0kb upstream 10000 false Chr06: 56807046-56817045 Eucalyptus grandis
Eucgr.F04425 10.0kb downstream 10.0kb downstream 23052 true Chr06: 56817046-56840097 Eucalyptus grandis
Eucgr.F04425 10.0kb downstream 10.0kb downstream 10000 false Chr06: 56830098-56840097 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124066992 5270 Rosid View MSA
123752070 5271 Pentapetalae View MSA
122788218 5272 Eudicot View MSA
122045228 5273 Angiosperm View MSA
121348805 5274 Embryophyte View MSA
123424302 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.5612 0.0 47.9115    
cufflinks 12.2788 0.0 28.9724   Low
cufflinks 15.6109 0.0 35.9361    
cufflinks 18.169 0.0 48.697    
cufflinks 13.478 0.0 34.8713    
cufflinks 18.1804 0.0 46.6993    

0 Strain