Gene : Eucgr.F04338 E. grandis v2.0
Defline:  (1 of 2) PF09588 - YqaJ-like viral recombinase domain (YqaJ) Genomic Order:  3912
Name:  ? Eucgr.F04338 Secondary Identifier:  ? PAC:32054152
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F04338 0.5kb upstream 0.5kb upstream 1289 true Chr06: 55922519-55923807 Eucalyptus grandis
Eucgr.F04338 0.5kb upstream 0.5kb upstream 500 false Chr06: 55923308-55923807 Eucalyptus grandis
Eucgr.F04338 0.5kb downstream 0.5kb downstream 1289 true Chr06: 55922019-55923307 Eucalyptus grandis
Eucgr.F04338 0.5kb downstream 0.5kb downstream 500 false Chr06: 55922019-55922518 Eucalyptus grandis
Eucgr.F04338 1.0kb upstream 1.0kb upstream 1789 true Chr06: 55922519-55924307 Eucalyptus grandis
Eucgr.F04338 1.0kb upstream 1.0kb upstream 1000 false Chr06: 55923308-55924307 Eucalyptus grandis
Eucgr.F04338 1.0kb downstream 1.0kb downstream 1789 true Chr06: 55921519-55923307 Eucalyptus grandis
Eucgr.F04338 1.0kb downstream 1.0kb downstream 1000 false Chr06: 55921519-55922518 Eucalyptus grandis
Eucgr.F04338 2.0kb upstream 2.0kb upstream 2789 true Chr06: 55922519-55925307 Eucalyptus grandis
Eucgr.F04338 2.0kb upstream 2.0kb upstream 2000 false Chr06: 55923308-55925307 Eucalyptus grandis
Eucgr.F04338 2.0kb downstream 2.0kb downstream 2789 true Chr06: 55920519-55923307 Eucalyptus grandis
Eucgr.F04338 2.0kb downstream 2.0kb downstream 2000 false Chr06: 55920519-55922518 Eucalyptus grandis
Eucgr.F04338 5.0kb upstream 5.0kb upstream 5789 true Chr06: 55922519-55928307 Eucalyptus grandis
Eucgr.F04338 5.0kb upstream 5.0kb upstream 5000 false Chr06: 55923308-55928307 Eucalyptus grandis
Eucgr.F04338 5.0kb downstream 5.0kb downstream 5789 true Chr06: 55917519-55923307 Eucalyptus grandis
Eucgr.F04338 5.0kb downstream 5.0kb downstream 5000 false Chr06: 55917519-55922518 Eucalyptus grandis
Eucgr.F04338 10.0kb upstream 10.0kb upstream 10789 true Chr06: 55922519-55933307 Eucalyptus grandis
Eucgr.F04338 10.0kb upstream 10.0kb upstream 10000 false Chr06: 55923308-55933307 Eucalyptus grandis
Eucgr.F04338 10.0kb downstream 10.0kb downstream 10789 true Chr06: 55912519-55923307 Eucalyptus grandis
Eucgr.F04338 10.0kb downstream 10.0kb downstream 10000 false Chr06: 55912519-55922518 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124067156 5270 Rosid View MSA
123738180 5271 Pentapetalae View MSA
122790598 5272 Eudicot View MSA
122045989 5273 Angiosperm View MSA
123429076 5275 Viridiplantae View MSA
121346090 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.73736 0.0 5.26174    
cufflinks 2.81046 0.0 7.9596    
cufflinks 3.60479 0.0 10.0394    
cufflinks 2.68268 0.0 7.65981    
cufflinks 1.43213 0.0 4.42968   Low
cufflinks 3.4693 0.0 9.81727    

0 Strain